Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76254883 . T A CCDS669.1:NM_004582.3:c.151Tat>Aat_NP_004573.2:p.51Y>N Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 TYR B:52 B:51 14.0 0.061 H -63.8 -44.8 14.0 0.061 0.0 HOH
 3.711
 CE2
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:56 B:51 7.0 0.03 H -55.2 -37.6 7.0 0.03 0.0 MPD
 9.710
 N
 C5
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:56 B:51 15.0 0.065 H -59.9 -43.4 15.0 0.065 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:56 B:51 13.0 0.057 H -58.3 -44.6 13.0 0.057 0.0 FAR
GER
 6.287
4.071
 N
OH
 C14
C19
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:56 B:51 14.0 0.061 H -57.8 -41.8 14.0 0.061 0.0 GRG
 3.626
 OH
 C19
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 TYR B:51 B:51 14.0 0.061 H -61.0 -40.0 14.0 0.061 0.0 HOH
 2.960
 OH
 O
TYR D:51 D:51 13.0 0.057 H -48.0 -49.5 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 TYR B:51 B:51 14.0 0.061 H -54.5 -37.3 14.0 0.061 0.0 FAR
HOH
 3.611
3.408
 CE2
CE2
 C14
O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 TYR B:51 B:51 13.0 0.057 H -46.4 -54.6 13.0 0.057 0.0 CX1
HOH
 5.965
2.832
 OH
OH
 C2
O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 13.0 0.057 H -55.2 -46.0 13.0 0.057 0.0 HOH
 2.907
 OH
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 11.0 0.048 H -53.8 -46.8 11.0 0.048 0.0 GRG
HOH
 3.746
3.504
 OH
CE2
 C19
O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 11.0 0.048 H -54.3 -45.7 11.0 0.048 0.0 FPP
HOH
 3.888
3.533
 OH
CD2
 C14
O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 12.0 0.052 H -58.2 -42.5 12.0 0.052 0.0 GER
HOH
 3.819
3.525
 OH
CE2
 C19
O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 13.0 0.057 H -59.6 -42.8 13.0 0.057 0.0 GER
HOH
 3.978
3.532
 OH
CE2
 C19
O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:51 B:51 13.0 0.057 H -56.3 -45.8 13.0 0.057 0.0 GER
HOH
 3.843
3.458
 OH
CD2
 C19
O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:51 B:51 13.0 0.057 H -50.6 -47.3 13.0 0.057 0.0 BD5
HOH
 6.334
3.505
 OH
CE2
 C6
O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:51 B:51 0.0 0.0 H -57.0 -45.3 0.0 0.0 0.0 BD6
HOH
 4.134
3.651
 CD2
CE2
 OAF
O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:51 B:51 5.0 0.022 H -61.3 -43.8 5.0 0.022 0.0 BD7
HOH
 3.993
3.635
 CE2
CD2
 OAF
O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:51 B:51 1.0 0.004 H -53.8 -48.3 1.0 0.004 0.0 BD8
HOH
 3.266
3.510
 OH
CD2
 CAI
O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:51 B:51 11.0 0.048 H -57.4 -43.8 11.0 0.048 0.0 BD9
HOH
 3.357
3.326
 OH
CD2
 C10
O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:50 B:51 12.0 0.052 H -53.3 -48.7 12.0 0.052 0.0 3PZ
DMS
DMS
HOH
 7.524
7.308
3.846
3.445
 CE2
CE2
OH
CD2
 C16
C2
O
O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:50 B:51 11.0 0.048 H -48.5 -51.0 11.0 0.048 0.0 3PZ
GRG
HOH
 7.536
3.668
3.461
 CE2
OH
CE2
 C16
C19
O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:50 B:51 12.0 0.052 H -54.8 -44.6 12.0 0.052 0.0 PZ3
HOH
 3.461
3.428
 OH
CD2
 CAI
O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 TYR B:50 B:51 17.0 0.074 H -57.1 -44.2 17.0 0.074 0.0 PJA
HOH
 6.798
2.605
 CE2
OH
 OAG
O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:50 B:51 11.0 0.048 H -53.7 -47.0 11.0 0.048 0.0 7TP
HOH
 5.960
3.460
 CE2
CE2
 OAF
O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:50 B:51 13.0 0.057 H -57.4 -42.9 13.0 0.057 0.0 7TQ
HOH
 3.727
3.384
 OH
CD2
 CAJ
O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:50 B:51 13.0 0.057 H -54.1 -48.9 13.0 0.057 0.0 7TR
HOH
 7.310
3.481
 CE2
CE2
 CAB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 TYR A:51 A:51 13.0 0.057 H -56.7 -45.3