Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76257198 . G A CCDS669.1:NM_004582.3:c.521tGt>tAt_NP_004573.2:p.174C>Y Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 CYS B:175 B:174 1.0 0.007 T -96.7 2.8 1.0 0.007 0.0 HOH
 2.403
 O
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 CYS B:179 B:174 0.0 0.0 T -96.8 0.6 0.0 0.0 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 CYS B:179 B:174 0.0 0.0 G -91.8 -0.6 0.0 0.0 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 CYS B:179 B:174 0.0 0.0 T -105.4 -1.8 0.0 0.0 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 CYS B:179 B:174 0.0 0.0 T -97.6 -6.3 0.0 0.0 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 CYS B:174 B:174 0.0 0.0 T -102.4 26.3 0.0 0.0 0.0 HOH
 5.438
 O
 O
CYS D:174 D:174 0.0 0.0 T -106.8 6.9 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 CYS B:174 B:174 0.0 0.0 T -97.3 22.5 0.0 0.0 0.0 HOH
 6.200
 N
 O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 CYS B:174 B:174 0.0 0.0 T -96.1 11.2 0.0 0.0 0.0 HOH
 3.372
 C
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -93.5 2.9 0.0 0.0 0.0 HOH
 2.586
 O
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -93.5 5.2 0.0 0.0 0.0 HOH
 3.495
 CA
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -94.4 4.6 0.0 0.0 0.0 HOH
 2.712
 O
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -93.2 5.0 0.0 0.0 0.0 HOH
 2.624
 O
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -93.7 2.9 0.0 0.0 0.0 HOH
 3.353
 C
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 CYS B:174 B:174 0.0 0.0 T -92.5 5.3 0.0 0.0 0.0 HOH
 2.773
 O
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 CYS B:174 B:174 0.0 0.0 T -97.6 15.9 0.0 0.0 0.0 HOH
 3.494
 C
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 CYS B:174 B:174 0.0 0.0 T -94.6 6.6 0.0 0.0 0.0 HOH
 2.928
 O
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 CYS B:174 B:174 0.0 0.0 T -93.1 3.1 0.0 0.0 0.0 HOH
 2.766
 O
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 CYS B:174 B:174 0.0 0.0 T -95.2 5.2 0.0 0.0 0.0 HOH
 3.429
 C
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 CYS B:174 B:174 0.0 0.0 T -92.3 5.4 0.0 0.0 0.0 HOH
 2.653
 O
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 CYS B:173 B:174 0.0 0.0 T -99.3 7.4 0.0 0.0 0.0 HOH
 3.384
 C
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 CYS B:173 B:174 0.0 0.0 T -98.0 9.6 0.0 0.0 0.0 HOH
 2.877
 O
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 CYS B:173 B:174 0.0 0.0 T -97.0 6.0 0.0 0.0 0.0 HOH
 2.718
 O
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 CYS B:173 B:174 0.0 0.0 T -98.0 9.5 0.0 0.0 0.0 HOH
 3.217
 C
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 CYS B:173 B:174 0.0 0.0 T -103.0 4.9 0.0 0.0 0.0 HOH
 2.847
 O
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 CYS B:173 B:174 0.0 0.0 T -99.8 8.0 0.0 0.0 0.0 HOH
 2.738
 O
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 CYS B:173 B:174 0.0 0.0 T -96.9 4.3 0.0 0.0 0.0 HOH
 2.653
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 CYS A:174 A:174 0.0 0.0 T -89.6 -0.8