Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76260216 . T A CCDS669.1:NM_004582.3:c.877Ttt>Att_NP_004573.2:p.293F>I Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 PHE B:294 B:293 11.0 0.052 H -69.7 -32.1 11.0 0.052 0.0 ZN
HOH
 6.350
6.792
 CD2
CZ
 ZN
O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 PHE B:298 B:293 15.0 0.071 H -65.7 -12.0 15.0 0.071 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 PHE B:298 B:293 12.0 0.057 H -71.0 -22.6 12.0 0.057 0.0 ZN
 7.306
 CD2
 ZN
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 PHE B:298 B:293 5.0 0.024 H -71.1 -18.2 5.0 0.024 0.0 FAR
GER
 8.013
3.724
 CE2
CE1
 C1
C20
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 PHE B:298 B:293 7.0 0.033 H -68.7 -20.8 7.0 0.033 0.0 GRG
 3.637
 CE1
 C20
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 PHE B:293 B:293 10.0 0.048 H -77.4 -24.2 10.0 0.048 0.0 ZN
HOH
 6.424
2.847
 CD1
O
 ZN
O
PHE D:293 D:293 11.0 0.052 H -79.3 -34.0 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 PHE B:293 B:293 11.0 0.052 H -66.6 -15.1 11.0 0.052 0.0 ZN
FAR
HOH
 6.626
4.840
5.386
 CD2
CE1
CZ
 ZN
C15
O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 PHE B:293 B:293 12.0 0.057 H -68.1 -26.3 12.0 0.057 0.0 ZN
CX1
HOH
 6.988
5.579
2.941
 CD2
CZ
O
 ZN
C3
O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 14.0 0.067 H -67.6 -29.9 14.0 0.067 0.0 ZN
HOH
 6.867
2.888
 CD2
O
 ZN
O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 6.0 0.029 H -71.0 -30.0 6.0 0.029 0.0 GRG
ZN
HOH
 3.682
6.507
4.979
 CE1
CD2
CZ
 C20
ZN
O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 5.0 0.024 H -70.3 -31.1 5.0 0.024 0.0 FPP
ZN
HOH
 3.745
6.620
4.914
 CZ
CD2
CZ
 C15
ZN
O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 6.0 0.029 H -70.8 -32.8 6.0 0.029 0.0 ZN
GER
HOH
 6.550
3.833
4.914
 CD2
CZ
CZ
 ZN
C20
O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 5.0 0.024 H -71.1 -33.1 5.0 0.024 0.0 ZN
GER
HOH
 6.795
3.987
5.016
 CD2
CZ
CZ
 ZN
C20
O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 PHE B:293 B:293 6.0 0.029 H -71.4 -31.1 6.0 0.029 0.0 ZN
GER
HOH
 6.651
3.779
4.916
 CD2
CE1
CZ
 ZN
C20
O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 PHE B:293 B:293 12.0 0.057 H -71.7 -28.7 12.0 0.057 0.0 BD5
ZN
HOH
 5.351
6.846
5.355
 CZ
CD2
CZ
 C1
ZN
O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 PHE B:293 B:293 1.0 0.005 H -70.5 -31.6 1.0 0.005 0.0 ZN
BD6
HOH
 6.847
4.032
7.178
 CD2
CZ
CZ
 ZN
O
O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 PHE B:293 B:293 7.0 0.033 H -71.6 -30.8 7.0 0.033 0.0 ZN
BD7
HOH
 6.931
3.866
5.604
 CD2
CZ
CZ
 ZN
O
O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 PHE B:293 B:293 0.0 0.0 H -70.7 -29.6 0.0 0.0 0.0 ZN
BD8
HOH
 6.439
3.600
5.423
 CD2
CZ
CZ
 ZN
CAM
O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 PHE B:293 B:293 5.0 0.024 H -72.7 -26.9 5.0 0.024 0.0 ZN
BD9
HOH
 6.734
3.588
6.924
 CD2
CZ
CZ
 ZN
C11
O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 PHE B:292 B:293 4.0 0.019 H -71.8 -30.5 4.0 0.019 0.0 3PZ
ZN
DMS
DMS
DMS
DMS
HOH
 5.634
6.587
7.924
7.036
6.783
3.713
5.123
 CE2
CD2
CZ
CE2
CZ
CE1
CZ
 C21
ZN
C1
S
C1
C2
O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 PHE B:292 B:293 7.0 0.033 H -76.3 -29.2 7.0 0.033 0.0 ZN
3PZ
GRG
HOH
 6.600
5.239
3.684
5.114
 CD2
CE2
CE1
CZ
 ZN
C21
C20
O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 PHE B:292 B:293 8.0 0.038 H -72.4 -32.9 8.0 0.038 0.0 ZN
PZ3
HOH
 6.778
3.954
5.105
 CD2
CZ
CZ
 ZN
CAJ
O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 PHE B:292 B:293 14.0 0.067 H -69.2 -38.8 14.0 0.067 0.0 PJA
ZN
HOH
 5.189
6.535
3.264
 CE2
CD2
O
 OAR
ZN
O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 PHE B:292 B:293 6.0 0.029 H -77.0 -36.4 6.0 0.029 0.0 ZN
7TP
HOH
 6.728
5.451
4.265
 CD2
CE2
O
 ZN
CAI
O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 PHE B:292 B:293 14.0 0.067 H -72.0 -37.7 14.0 0.067 0.0 ZN
7TQ
HOH
 6.702
5.129
3.537
 CD2
CE2
CZ
 ZN
CAO
O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 PHE B:292 B:293 13.0 0.062 H -69.0 -31.2 13.0 0.062 0.0 ZN
7TR
HOH
 6.450
5.726
3.060
 CD2
CZ
O
 ZN
CAW
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 PHE A:293 A:293 14.0 0.067 H -71.8 -29.0