Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7833543 . T A CCDS88.1:NM_004781.3:c.44cTt>cAt_NP_004772.1:p.15L>H Homo sapiens vesicle associated membrane protein 3 (VAMP3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1sfc 1 P63045 97.06 7e-42 X-RAY
 1998-10-28 LEU A:32 A:32 111.0 0.653 H -54.8 -36.7 1.0 0.006 0.647 B:P32851:0.447
D:P60881:0.324
C:P60881:0.053
LEU E:32 E:32 100.0 0.588 H -98.2 -55.8 NA NA NA
LEU I:32 I:32 103.0 0.606 H -50.7 -30.1 NA NA NA
1kil 1 P63045 98.48 2e-41 X-RAY
 2002-03-13 LEU A:6 A:32 114.0 0.671 H -66.5 -46.5 7.0 0.041 0.63 D:P60880:0.171
B:P32851:0.541
C:P60880:0.041
 HOH
 5.566
 N
 O
6ip1 1 P63045 97.01 5e-41 EM
 2019-04-24 LEU A:35 A:32 91.0 0.535 H -71.3 -43.7 5.0 0.029 0.506 B:P32851:0.418
D:P60881:0.153
3hd7 1 P63045 91.78 6e-41 X-RAY
 2009-07-14 LEU A:7 A:32 109.0 0.641 H -71.1 -38.9 8.0 0.047 0.594 B:P32851:0.518
D:P60881:0.129
LEU E:7 E:32 107.0 0.629 H -74.1 -40.6 NA NA NA
3ipd 1 P63045 91.78 6e-41 X-RAY
 2009-09-01 LEU A:7 A:32 108.0 0.635 H -58.3 -44.0 24.0 0.141 0.494 D:P60881:0.024
B:P32851:0.471
LEU E:7 E:32 107.0 0.629 H -58.8 -44.2 NA NA NA
2n1t 1 P63045 98.46 2e-40 NMR
 2015-06-03 LEU A:8 A:32 124.0 0.729 H -65.8 -42.3 21.0 0.124 0.605 D:P60880:0.306
B:P32851:0.388
6mdm 4 P63045 88.89 6e-40 EM
 2018-09-19 LEU I:60 J:32 106.0 0.624 H -75.4 -43.0 13.0 0.076 0.548 H:P32851:0.4
G:P60881:0.153
6mdn 4 P63045 88.89 6e-40 EM
 2018-09-19 LEU I:60 J:32 98.0 0.576 H -57.6 -42.2 4.0 0.024 0.552 H:P32851:0.406
G:P60881:0.253
1n7s 1 P63045 98.41 7e-39 X-RAY
 2002-12-27 LEU A:6 A:32 122.0 0.718 H -64.8 -50.0 10.0 0.059 0.659 D:P60881:0.176
B:P32851:0.588
C:P60881:0.035
 HOH
 3.643
 O
 O
3j96 3 P63045 98.41 7e-39 EM
 2015-01-28 LEU K:6 K:32 120.0 0.706 H -74.3 -61.9 0.0 0.0 0.706 L:P32851:0.653
M:None:0.141
3j97 3 P63045 98.41 7e-39 EM
 2015-01-28 LEU K:6 K:32 61.0 NA H -55.9 -74.1 10.0 NA NA L:P32851:NA
M:None:NA
3j98 3 P63045 98.41 7e-39 EM
 2015-01-28 LEU K:6 K:32 72.0 NA H -65.9 -57.5 3.0 NA NA M:None:NA
L:P32851:NA
3j99 3 P63045 98.41 7e-39 EM
 2015-01-28 LEU K:6 K:32 70.0 NA H -65.9 -57.4 5.0 NA NA M:None:NA
L:P32851:NA
5ccg 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LEU A:6 A:32 120.0 0.706 H -62.7 -43.0 6.0 0.035 0.671 D:P60881:0.188
B:P32851:0.547
C:P60881:0.018
LEU G:6 G:32 112.0 0.659 H -62.7 -45.3 NA NA NA
5cch 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LEU A:6 A:32 115.0 0.676 H -63.6 -47.3 16.0 0.094 0.582 B:P32851:0.476
D:P60881:0.165
5cci 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LEU A:6 A:32 120.0 0.706 H -59.8 -52.4 5.0 0.029 0.677 B:P32851:0.559
D:P60881:0.206
5kj7 1 P63025 98.41 7e-39 X-RAY
 2016-10-19 LEU A:6 A:32 122.0 0.718 H -64.0 -42.2 6.0 0.035 0.683 B:P32851:0.553
D:P60881:0.188
C:P60881:0.018
LEU G:6 G:32 113.0 0.665 H -64.4 -45.7 NA NA NA
5kj8 1 P63025 98.41 7e-39 X-RAY
 2016-10-19 LEU A:6 A:32 122.0 0.718 H -61.8 -48.1 2.0 0.012 0.706 B:P32851:0.582
C:P60881:0.035
D:P60881:0.2
LEU G:6 G:32 111.0 0.653 H -61.4 -49.7 NA NA NA
6mti 3 P63045 98.41 7e-39 EM
 2019-04-24 LEU G:6 A:32 122.0 0.718 H -59.7 -52.3 6.0 0.035 0.683 H:P32851:0.565
J:P60881:0.194
LEU K:6 E:32 121.0 0.712 H -59.8 -52.5 5.0 0.029 0.683 N:P60881:0.2
L:P32851:0.559
LEU O:6 I:32 122.0 0.718 H -59.9 -52.4 6.0 0.035 0.683 R:P60881:0.194
P:P32851:0.565
LEU S:6 M:32 122.0 0.718 H -59.7 -52.4 6.0 0.035 0.683 V:P60881:0.194
T:P32851:0.565
LEU W:6 Q:32 120.0 0.706 H -59.8 -52.4 6.0 0.035 0.671 X:P32851:0.559
Z:P60881:0.194
LEU AA:6 U:32 121.0 0.712 H -59.7 -52.5 7.0 0.041 0.671 BA:P32851:0.559
DA:P60881:0.2
6wvw 1 P63045 98.41 7e-39 X-RAY
 2021-03-17 LEU A:6 A:32 99.0 0.582 H -72.1 -39.5 4.0 0.024 0.558 D:P60881:0.194
B:P32851:0.435
C:P60881:0.047
 HOH
 5.414
 O
 O
LEU E:6 E:32 90.0 0.529 H -63.7 -41.6 NA NA NA
1l4a 1 P47194 86.57 2e-37 X-RAY
 2002-07-31 LEU A:17 A:41 133.0 0.782 H -69.6 -61.4 5.0 0.029 0.753 B:O46345:0.453
C:Q8T3S4:0.035
D:Q8T3S4:0.359
 HOH
 3.745
 CD2
 O
5w5c 1 P63045 97.5 2e-20 X-RAY
 2017-08-23 LEU A:6 A:32 132.0 0.776 H -61.6 -49.3 10.0 0.059 0.717 D:P60881:0.153
B:P32851:0.653
C:P60881:0.053
 HOH
 3.689
 O
 O
5w5d 1 P63045 97.5 2e-20 X-RAY
 2017-08-23 LEU A:6 A:32 140.0 0.824 H -66.8 -43.5 9.0 0.053 0.771 B:P32851:0.641
C:P60881:0.071
D:P60881:0.176
 HOH
 5.057
 N
 O
3rk2 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LEU A:9 A:32 142.0 0.835 H -61.4 -48.1 35.0 0.206 0.629 D:P60880:0.182
B:P32851:0.547
C:P60880:0.012
 HOH
 4.787
 CG
 O
LEU E:9 E:32 115.0 0.676 H -62.0 -59.2 NA NA NA
3rk3 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LEU A:9 A:32 107.0 0.629 H -73.8 -42.8 12.0 0.071 0.558 B:P32851:0.453
D:P60880:0.147
C:P60880:0.006
3rl0 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LEU A:9 A:32 105.0 0.618 H -65.5 -47.4 1.0 0.006 0.612 B:P32851:0.541
D:P60880:0.153
LEU E:9 E:32 103.0 0.606 H -66.1 -46.8 NA NA NA
LEU I:9 I:32 102.0 0.6 H -66.6 -46.6 NA NA NA
LEU M:9 M:32 103.0 0.606 H -66.0 -47.2 NA NA NA
LEU Q:9 Q:32 104.0 0.612 H -66.1 -46.9 NA NA NA
LEU U:9 U:32 104.0 0.612 H -66.2 -47.2 NA NA NA
LEU Y:9 Y:32 104.0 0.612 H -65.6 -47.3 NA NA NA
LEU CA:9 c:32 105.0 0.618 H -66.2 -46.9 NA NA NA
3fie 2 P63027 83.33 1e-13 X-RAY
 2009-06-23 LEU C:11 C:32 159.0 0.935 S -41.7 94.3 46.0 0.271 0.664 A:Q57236:0.665
 HOH
 3.776
 CA
 O
LEU D:11 D:32 141.0 0.829 S 55.2 104.0 NA NA NA
3fii 2 P63027 96.67 9e-13 X-RAY
 2009-06-23 LEU B:6 B:32 217.0 1.0 360.0 81.2 94.0 0.553 0.447 A:Q57236:0.724
 HOH
 3.244
 CD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15836-f1 1 Q15836 100.0 2e-69 LEU A:15 A:15 114.0 0.671 H -59.9 -44.1
af-p63027-f1 1 P63027 94.37 2e-42 LEU A:32 A:32 118.0 0.694 H -63.7 -40.8
af-p23763-f1 1 P23763 94.12 3e-42 LEU A:34 A:34 106.0 0.624 H -66.3 -37.6