Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7837250 . A C CCDS88.1:NM_004781.3:c.103Aag>Cag_NP_004772.1:p.35K>Q Homo sapiens vesicle associated membrane protein 3 (VAMP3), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1sfc 1 P63045 97.06 7e-42 X-RAY
 1998-10-28 LYS A:52 A:52 120.0 0.6 H -65.5 -46.0 46.0 0.23 0.37 D:P60881:0.37
LYS E:52 E:52 115.0 0.575 H -48.3 -37.1 NA NA NA
LYS I:52 I:52 127.0 0.635 H -51.8 -27.7 NA NA NA
1kil 1 P63045 98.48 2e-41 X-RAY
 2002-03-13 LYS A:26 A:52 122.0 0.61 H -72.2 -38.3 45.0 0.225 0.385 D:P60880:0.385
 HOH
 3.511
 NZ
 O
6ip1 1 P63045 97.01 5e-41 EM
 2019-04-24 LYS A:55 A:52 135.0 0.675 H -70.4 -34.9 23.0 0.115 0.56 D:P60881:0.405
G:A5D7S0:0.225
3hd7 1 P63045 91.78 6e-41 X-RAY
 2009-07-14 LYS A:27 A:52 132.0 0.66 H -76.7 -37.2 43.0 0.215 0.445 D:P60881:0.445
LYS E:27 E:52 134.0 0.67 H -79.0 -39.5 NA NA NA
3ipd 1 P63045 91.78 6e-41 X-RAY
 2009-09-01 LYS A:27 A:52 127.0 0.635 H -86.4 -40.6 42.0 0.21 0.425 D:P60881:0.425
LYS E:27 E:52 125.0 0.625 H -86.7 -39.9 NA NA NA
2n1t 1 P63045 98.46 2e-40 NMR
 2015-06-03 LYS A:28 A:52 110.0 0.55 H -72.6 -21.0 38.0 0.19 0.36 D:P60880:0.36
6mdm 4 P63045 88.89 6e-40 EM
 2018-09-19 LYS I:80 J:52 81.0 0.405 H -70.8 -35.6 28.0 0.14 0.265 G:P60881:0.265
6mdn 4 P63045 88.89 6e-40 EM
 2018-09-19 LYS I:80 J:52 89.0 0.445 H -74.8 -39.7 27.0 0.135 0.31 G:P60881:0.31
1n7s 1 P63045 98.41 7e-39 X-RAY
 2002-12-27 LYS A:26 A:52 126.0 0.63 H -65.1 -35.9 46.0 0.23 0.4 D:P60881:0.4
 HOH
 2.835
 NZ
 O
3j96 3 P63045 98.41 7e-39 EM
 2015-01-28 LYS K:26 K:52 102.0 0.51 H -84.1 -34.5 7.0 0.035 0.475 I:P54921:0.05
M:None:0.44
3j97 3 P63045 98.41 7e-39 EM
 2015-01-28 LYS K:26 K:52 103.0 0.515 H -59.2 -24.6 26.0 0.13 0.385 I:P54921:0.09
M:None:0.295
3j98 3 P63045 98.41 7e-39 EM
 2015-01-28 LYS K:26 K:52 114.0 0.57 H -51.6 -53.9 16.0 0.08 0.49 I:P54921:0.19
M:None:0.32
3j99 3 P63045 98.41 7e-39 EM
 2015-01-28 LYS K:26 K:52 112.0 0.56 H -51.7 -53.9 17.0 0.085 0.475 I:P54921:0.18
M:None:0.305
5ccg 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LYS A:26 A:52 130.0 0.65 H -59.5 -37.3 52.0 0.26 0.39 D:P60881:0.39
 CA
 7.719
 O
 CA
LYS G:26 G:52 127.0 0.635 H -60.4 -41.1 NA NA NA
5cch 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LYS A:26 A:52 127.0 0.635 H -61.3 -45.7 55.0 0.275 0.36 D:P60881:0.36
5cci 1 P63045 98.41 7e-39 X-RAY
 2015-08-12 LYS A:26 A:52 115.0 0.575 H -60.3 -36.2 20.0 0.1 0.475 F:P21707:0.04
D:P60881:0.435
5kj7 1 P63025 98.41 7e-39 X-RAY
 2016-10-19 LYS A:26 A:52 131.0 0.655 H -58.8 -35.8 53.0 0.265 0.39 D:P60881:0.39
 CA
 7.463
 O
 CA
LYS G:26 G:52 127.0 0.635 H -61.0 -39.8 NA NA NA
5kj8 1 P63025 98.41 7e-39 X-RAY
 2016-10-19 LYS A:26 A:52 133.0 0.665 H -64.0 -35.0 59.0 0.295 0.37 D:P60881:0.37
LYS G:26 G:52 126.0 0.63 H -65.1 -38.1 NA NA NA
6mti 3 P63045 98.41 7e-39 EM
 2019-04-24 LYS G:26 A:52 116.0 0.58 H -60.3 -36.2 29.0 0.145 0.435 J:P60881:0.435
LYS K:26 E:52 117.0 0.585 H -60.4 -36.2 28.0 0.14 0.445 N:P60881:0.445
LYS O:26 I:52 118.0 0.59 H -60.4 -36.2 29.0 0.145 0.445 R:P60881:0.445
LYS S:26 M:52 118.0 0.59 H -60.3 -36.3 29.0 0.145 0.445 V:P60881:0.445
LYS W:26 Q:52 117.0 0.585 H -60.4 -36.1 29.0 0.145 0.44 Z:P60881:0.44
LYS AA:26 U:52 115.0 0.575 H -60.3 -36.2 28.0 0.14 0.435 DA:P60881:0.435
6wvw 1 P63045 98.41 7e-39 X-RAY
 2021-03-17 LYS A:26 A:52 132.0 0.66 H -62.6 -40.1 48.0 0.24 0.42 D:P60881:0.42
 HOH
 3.012
 HZ3
 O
LYS E:26 E:52 129.0 0.645 H -63.1 -38.5 NA NA NA
1l4a 1 P47194 86.57 2e-37 X-RAY
 2002-07-31 LYS A:37 A:61 136.0 0.68 H -54.8 -39.2 73.0 0.365 0.315 D:Q8T3S4:0.315
 HOH
 5.621
 NZ
 O
5w5c 1 P63045 97.5 2e-20 X-RAY
 2017-08-23 LYS A:26 A:52 121.0 0.605 H -59.1 -38.6 33.0 0.165 0.44 F:P21707:0.07
D:P60881:0.395
 GOL
HOH
 4.856
2.815
 NZ
NZ
 O1
O
5w5d 1 P63045 97.5 2e-20 X-RAY
 2017-08-23 LYS A:26 A:52 124.0 0.62 H -58.5 -43.9 37.0 0.185 0.435 F:P21707:0.05
D:P60881:0.395
 HOH
 5.209
 O
 O
3rk2 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LYS A:29 A:52 121.0 0.605 H -76.6 -29.6 48.0 0.24 0.365 D:P60880:0.365
 HOH
 6.568
 NZ
 O
LYS E:29 E:52 123.0 0.615 H -72.9 -38.3 NA NA NA
3rk3 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LYS A:29 A:52 124.0 0.62 H -40.7 -49.1 31.0 0.155 0.465 D:P60880:0.465
3rl0 1 P63027 87.5 4e-16 X-RAY
 2011-07-27 LYS A:29 A:52 125.0 0.625 H -65.4 -42.3 41.0 0.205 0.42 D:P60880:0.42
LYS E:29 E:52 124.0 0.62 H -66.1 -42.5 NA NA NA
LYS I:29 I:52 133.0 0.665 H -65.6 -42.3 NA NA NA
LYS M:29 M:52 136.0 0.68 H -66.0 -42.5 NA NA NA
LYS Q:29 Q:52 122.0 0.61 H -65.9 -42.2 NA NA NA
LYS U:29 U:52 126.0 0.63 H -64.5 -42.1 NA NA NA
LYS Y:29 Y:52 128.0 0.64 H -64.8 -42.5 NA NA NA
LYS CA:29 c:52 123.0 0.615 H -65.9 -42.4 NA NA NA
3fie 2 P63027 83.33 1e-13 X-RAY
 2009-06-23 LYS C:31 C:52 120.0 0.6 H -78.5 -30.2 75.0 0.375 0.225 A:Q57236:0.225
 HOH
 2.942
 NZ
 O
LYS D:31 D:52 149.0 0.745 H -80.1 -28.2 NA NA NA
3fii 2 P63027 96.67 9e-13 X-RAY
 2009-06-23 LYS B:26 B:52 139.0 0.695 H -83.3 -23.1 100.0 0.5 0.195 A:Q57236:0.195
 HOH
 3.368
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15836-f1 1 Q15836 100.0 2e-69 LYS A:35 A:35 123.0 0.615 H -64.4 -38.2
af-p63027-f1 1 P63027 94.37 2e-42 LYS A:52 A:52 120.0 0.6 H -63.8 -39.8
af-p23763-f1 1 P23763 94.12 3e-42 LYS A:54 A:54 119.0 0.595 H -68.0 -35.2