Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 95353620 | . | C | A | CCDS31249.1:NM_006744.3:c.528gaG>gaT_NP_006735.2:p.176E>D | Homo sapiens retinol binding protein 4 (RBP4), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4o9s | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2014-07-02 | GLU | A:190 | A:158 | 40.0 | 0.211 | H | -71.3 | -21.6 | 40.0 | 0.211 | 0.0 |
EDO EDO EDO HOH |
3.626 8.391 5.163 5.044 |
OE1 N OE1 N |
C1 C1 C2 O |
||
GLU | B:190 | B:158 | 42.0 | 0.221 | H | -68.0 | -23.7 | NA | NA | NA | |||||||||||||
3fmz | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2009-01-27 | GLU | A:187 | A:158 | 70.0 | 0.368 | H | -67.1 | -15.8 | 70.0 | 0.368 | 0.0 |
HOH |
7.467 |
O |
O |
||
GLU | B:187 | B:158 | 57.0 | 0.3 | H | -62.0 | -34.1 | NA | NA | NA | |||||||||||||
4psq | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2014-07-02 | GLU | A:187 | B:158 | 83.0 | 0.437 | H | -72.3 | -25.3 | 83.0 | 0.437 | 0.0 |
EDO EDO EDO HOH |
3.377 7.731 8.569 4.935 |
O N OE1 N |
O2 O1 O2 O |
||
GLU | B:187 | A:158 | 80.0 | 0.421 | H | -72.7 | -21.5 | NA | NA | NA | |||||||||||||
6qba | 1 | P02753 | 100.0 | 2e-138 |
X-RAY |
2020-06-03 | GLU | A:160 | A:158 | 48.0 | 0.253 | H | -65.7 | -31.3 | 48.0 | 0.253 | 0.0 |
IMD IMD ZN HOH |
2.626 7.724 7.160 2.517 |
OE2 OE1 OE2 O |
HN1 H4 ZN O |
||
1jyd | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2003-07-01 | GLU | A:159 | A:158 | 89.0 | 0.468 | H | -62.2 | -29.4 | 89.0 | 0.468 | 0.0 |
HOH |
1.988 |
OE2 |
O |
||
1brp | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1994-01-31 | GLU | A:158 | A:158 | 68.0 | 0.358 | H | -66.2 | -16.2 | 68.0 | 0.358 | 0.0 |
HOH |
3.931 |
OE2 |
O |
||
1brq | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1994-01-31 | GLU | A:158 | A:158 | 65.0 | 0.342 | H | -65.1 | -20.7 | 65.0 | 0.342 | 0.0 |
HOH |
6.317 |
N |
O |
||
1rbp | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1991-07-15 | GLU | A:158 | A:158 | 88.0 | 0.463 | H | -57.4 | -30.8 | 88.0 | 0.463 | 0.0 |
HOH |
3.093 |
O |
O |
||
5nty | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 61.0 | 0.321 | H | -63.9 | -29.4 | 61.0 | 0.321 | 0.0 |
HOH |
2.585 |
O |
O |
||
5nu2 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 50.0 | 0.263 | H | -63.9 | -30.2 | 50.0 | 0.263 | 0.0 |
HOH |
2.544 |
O |
O |
||
5nu6 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 66.0 | 0.347 | H | -66.2 | -27.3 | 66.0 | 0.347 | 0.0 |
HOH |
2.515 |
O |
O |
||
5nu7 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 43.0 | 0.226 | H | -62.8 | -28.6 | 43.0 | 0.226 | 0.0 |
HOH |
2.661 |
O |
O |
||
5nu8 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 50.0 | 0.263 | H | -63.8 | -30.2 | 50.0 | 0.263 | 0.0 |
HOH |
2.654 |
O |
O |
||
5nu9 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 73.0 | 0.384 | H | -64.2 | -28.4 | 73.0 | 0.384 | 0.0 |
HOH |
2.567 |
O |
O |
||
5nua | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | GLU | A:158 | A:158 | 55.0 | 0.289 | H | -64.6 | -28.9 | 55.0 | 0.289 | 0.0 |
HOH |
2.556 |
O |
O |
||
5nub | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-14 | GLU | A:158 | A:158 | 71.0 | 0.374 | H | -65.3 | -28.0 | 71.0 | 0.374 | 0.0 |
HOH |
2.582 |
O |
O |
||
1jyj | 1 | P02753 | 98.9 | 8e-136 |
X-RAY |
2003-07-01 | GLU | A:159 | A:158 | 71.0 | 0.374 | H | -60.6 | -28.9 | 71.0 | 0.374 | 0.0 |
GOL HOH |
9.280 2.592 |
O O |
O1 O |
||
1qab | 2 | P02753 | 98.33 | 2e-133 |
X-RAY |
1999-02-16 | GLU | E:155 | E:158 | 91.0 | 0.479 | S | -114.8 | -18.9 | 91.0 | 0.479 | 0.0 | ||||||
GLU | F:155 | F:158 | 87.0 | 0.458 | I | -63.6 | -81.6 | 87.0 | 0.458 | 0.0 | |||||||||||||
3bsz | 2 | P02753 | 100.0 | 3e-133 |
X-RAY |
2008-11-11 | GLU | E:158 | E:158 | 60.0 | 0.316 | H | -65.6 | -31.6 | 60.0 | 0.316 | 0.0 |
HOH |
3.420 |
OE1 |
O |
||
GLU | F:158 | F:158 | 65.0 | 0.342 | H | -68.6 | -31.5 | 65.0 | 0.342 | 0.0 |
HOH |
5.207 |
O |
O |
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2wqa | 2 | P02753 | 99.44 | 3e-133 |
X-RAY |
2010-09-01 | GLU | E:159 | E:158 | 69.0 | 0.363 | H | -70.7 | -19.9 | 69.0 | 0.363 | 0.0 |
SO4 HOH |
8.446 5.690 |
OE1 OE1 |
O3 O |
||
GLU | F:159 | F:158 | 59.0 | 0.311 | H | -75.7 | -19.4 | 59.0 | 0.311 | 0.0 |
SO4 SO4 HOH |
8.880 4.721 4.057 |
OE1 OE2 CB |
O2 O2 O |
|||||||||
2wq9 | 1 | P02753 | 100.0 | 1e-131 |
X-RAY |
2010-09-01 | GLU | A:158 | A:158 | 46.0 | 0.242 | H | -62.9 | -29.9 | 46.0 | 0.242 | 0.0 |
HOH |
2.576 |
O |
O |
||
2wr6 | 1 | P02753 | 99.43 | 1e-131 |
X-RAY |
2010-09-15 | GLU | A:159 | A:158 | 54.0 | 0.284 | H | -54.9 | -30.6 | 54.0 | 0.284 | 0.0 |
HOH |
2.543 |
O |
O |
||
1aqb | 1 | P27485 | 92.9 | 7e-131 |
X-RAY |
1998-01-28 | GLU | A:158 | A:158 | 69.0 | 0.363 | H | -67.2 | -22.1 | 69.0 | 0.363 | 0.0 |
HOH |
3.300 |
O |
O |
||
1hbq | 1 | P18902 | 92.35 | 4e-130 |
X-RAY |
1994-01-31 | GLU | A:158 | A:158 | 81.0 | 0.426 | H | -63.0 | -27.1 | 81.0 | 0.426 | 0.0 |
HOH |
3.190 |
O |
O |
||
1erb | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-01-31 | GLU | A:158 | A:158 | 82.0 | 0.432 | H | -68.5 | -23.7 | 82.0 | 0.432 | 0.0 |
HOH |
3.093 |
O |
O |
||
1fel | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | GLU | A:158 | A:158 | 78.0 | 0.411 | H | -62.3 | -22.4 | 78.0 | 0.411 | 0.0 |
HOH |
3.922 |
CG |
O |
||
1fem | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | GLU | A:158 | A:158 | 81.0 | 0.426 | H | -74.8 | -24.0 | 81.0 | 0.426 | 0.0 |
HOH |
2.153 |
OE2 |
O |
||
1fen | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | GLU | A:158 | A:158 | 79.0 | 0.416 | H | -65.5 | -19.3 | 79.0 | 0.416 | 0.0 |
HOH |
2.588 |
O |
O |
||
1hbp | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-01-31 | GLU | A:158 | A:158 | 76.0 | 0.4 | H | -64.6 | -21.8 | 76.0 | 0.4 | 0.0 |
HOH |
2.846 |
O |
O |
||
1kt3 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | GLU | A:158 | A:158 | 27.0 | 0.142 | H | -50.8 | -44.2 | 27.0 | 0.142 | 0.0 |
HOH |
2.832 |
OE2 |
O |
||
1kt4 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | GLU | A:158 | A:158 | 25.0 | 0.132 | H | -55.6 | -37.6 | 25.0 | 0.132 | 0.0 |
HOH |
2.620 |
O |
O |
||
1kt6 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | GLU | A:158 | A:158 | 24.0 | 0.126 | H | -64.8 | -28.3 | 24.0 | 0.126 | 0.0 |
HOH |
2.745 |
O |
O |
||
1kt7 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | GLU | A:158 | A:158 | 51.0 | 0.268 | H | -64.4 | -26.0 | 51.0 | 0.268 | 0.0 |
HOH |
2.581 |
OE1 |
O |
||
1kt5 | 1 | P18902 | 93.14 | 1e-124 |
X-RAY |
2003-06-03 | GLU | A:158 | A:158 | 35.0 | 0.184 | H | -55.9 | -38.9 | 35.0 | 0.184 | 0.0 |
HOH |
2.556 |
O |
O |
||
1rlb | 2 | P02753 | 92.53 | 2e-123 |
X-RAY |
1996-04-11 | GLU | E:158 | E:158 | 107.0 | 0.563 | H | -69.7 | -37.3 | 107.0 | 0.563 | 0.0 | ||||||
GLU | F:158 | F:158 | 109.0 | 0.574 | H | -67.2 | -15.5 | 109.0 | 0.574 | 0.0 | |||||||||||||
1iiu | 1 | P41263 | 87.21 | 3e-116 |
X-RAY |
2002-01-16 | ASP | A:157 | A:158 | 73.0 | 0.487 | T | -66.8 | -0.1 | 73.0 | 0.487 | 0.0 |
HOH |
3.242 |
O |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p02753-f1 | 1 | P02753 | 100.0 | 2e-152 | GLU | A:176 | A:176 | 66.0 | 0.347 | H | -60.9 | -33.5 |