Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 95360719 | . | G | A | CCDS31249.1:NM_006744.3:c.67Cga>Tga_NP_006735.2:p.23R>* | Homo sapiens retinol binding protein 4 (RBP4), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4o9s | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2014-07-02 | ARG | A:37 | A:5 | 122.0 | 0.542 | B | -66.6 | 141.7 | 122.0 | 0.542 | 0.0 |
EDO PEG HOH |
7.112 8.316 3.644 |
O C CD |
O2 O1 O |
||
| ARG | B:37 | B:5 | 117.0 | 0.52 | B | -67.7 | 142.9 | NA | NA | NA | |||||||||||||
| 3fmz | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2009-01-27 | ARG | A:34 | A:5 | 125.0 | 0.556 | -60.7 | 120.0 | 125.0 | 0.556 | 0.0 |
HOH |
4.312 |
C |
O |
|||
| ARG | B:34 | B:5 | 118.0 | 0.524 | B | -89.6 | 132.3 | NA | NA | NA | |||||||||||||
| 4psq | 1 | P02753 | 98.92 | 2e-139 |
X-RAY |
2014-07-02 | ARG | A:34 | B:5 | 123.0 | 0.547 | -68.7 | 138.2 | 123.0 | 0.547 | 0.0 |
EDO EDO EDO EDO HOH |
6.728 7.630 9.205 3.192 3.285 |
O O C CD N |
O2 O1 O2 O2 O |
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| ARG | B:34 | A:5 | 121.0 | 0.538 | -63.8 | 139.5 | NA | NA | NA | ||||||||||||||
| 6qba | 1 | P02753 | 100.0 | 2e-138 |
X-RAY |
2020-06-03 | ARG | A:7 | A:5 | 120.0 | 0.533 | B | -76.6 | 129.6 | 120.0 | 0.533 | 0.0 |
HOH |
2.859 |
HD2 |
O |
||
| 1jyd | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2003-07-01 | ARG | A:6 | A:5 | 125.0 | 0.556 | B | -71.6 | 126.3 | 125.0 | 0.556 | 0.0 |
GOL GOL HOH |
5.551 8.376 2.697 |
CG C NH1 |
O1 O3 O |
||
| 1brp | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1994-01-31 | ARG | A:5 | A:5 | 111.0 | 0.493 | B | -94.0 | 122.0 | 111.0 | 0.493 | 0.0 |
HOH |
3.113 |
NH2 |
O |
||
| 1brq | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1994-01-31 | ARG | A:5 | A:5 | 110.0 | 0.489 | B | -89.3 | 126.6 | 110.0 | 0.489 | 0.0 |
HOH |
2.961 |
NH2 |
O |
||
| 1rbp | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
1991-07-15 | ARG | A:5 | A:5 | 119.0 | 0.529 | -69.1 | 138.2 | 119.0 | 0.529 | 0.0 |
HOH |
2.984 |
NH1 |
O |
|||
| 5nty | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 127.0 | 0.564 | B | -65.9 | 129.7 | 127.0 | 0.564 | 0.0 |
HOH |
3.627 |
CG |
O |
||
| 5nu2 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 127.0 | 0.564 | -65.8 | 127.7 | 127.0 | 0.564 | 0.0 |
HOH |
3.563 |
CG |
O |
|||
| 5nu6 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 127.0 | 0.564 | -66.4 | 128.3 | 127.0 | 0.564 | 0.0 |
HOH |
3.522 |
CG |
O |
|||
| 5nu7 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 130.0 | 0.578 | -66.4 | 129.4 | 130.0 | 0.578 | 0.0 |
HOH |
3.668 |
CG |
O |
|||
| 5nu8 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 128.0 | 0.569 | -65.7 | 128.0 | 128.0 | 0.569 | 0.0 |
HOH |
3.489 |
CG |
O |
|||
| 5nu9 | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 128.0 | 0.569 | -65.9 | 127.0 | 128.0 | 0.569 | 0.0 |
HOH |
3.546 |
CG |
O |
|||
| 5nua | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-07 | ARG | A:5 | A:5 | 127.0 | 0.564 | -67.0 | 128.0 | 127.0 | 0.564 | 0.0 |
HOH |
3.500 |
CG |
O |
|||
| 5nub | 1 | P02753 | 100.0 | 8e-138 |
X-RAY |
2018-03-14 | ARG | A:5 | A:5 | 129.0 | 0.573 | -66.4 | 127.9 | 129.0 | 0.573 | 0.0 |
HOH |
3.466 |
CG |
O |
|||
| 1jyj | 1 | P02753 | 98.9 | 8e-136 |
X-RAY |
2003-07-01 | ARG | A:6 | A:5 | 127.0 | 0.564 | B | -73.2 | 128.8 | 127.0 | 0.564 | 0.0 |
GOL HOH |
8.738 3.110 |
C NH2 |
O1 O |
||
| 1qab | 2 | P02753 | 98.33 | 2e-133 |
X-RAY |
1999-02-16 | ALA | E:2 | E:5 | 36.0 | 0.313 | -146.8 | 173.7 | 36.0 | 0.313 | 0.0 | |||||||
| ALA | F:2 | F:5 | 23.0 | 0.2 | 136.6 | 30.9 | 23.0 | 0.2 | 0.0 | ||||||||||||||
| 3bsz | 2 | P02753 | 100.0 | 3e-133 |
X-RAY |
2008-11-11 | ARG | E:5 | E:5 | 115.0 | 0.511 | -117.2 | 115.5 | 115.0 | 0.511 | 0.0 |
HOH |
7.161 |
N |
O |
|||
| ARG | F:5 | F:5 | 121.0 | 0.538 | -119.2 | 114.2 | 121.0 | 0.538 | 0.0 |
HOH |
3.470 |
CD |
O |
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| 2wqa | 2 | P02753 | 99.44 | 3e-133 |
X-RAY |
2010-09-01 | ARG | E:6 | E:5 | 122.0 | 0.542 | B | -76.3 | 124.2 | 122.0 | 0.542 | 0.0 |
SO4 |
3.568 |
CD |
O3 |
||
| ARG | F:6 | F:5 | 117.0 | 0.52 | B | -81.8 | 126.1 | 117.0 | 0.52 | 0.0 |
SO4 HOH |
3.849 4.904 |
CD N |
O2 O |
|||||||||
| 2wq9 | 1 | P02753 | 100.0 | 1e-131 |
X-RAY |
2010-09-01 | ARG | A:5 | A:5 | 126.0 | 0.56 | -69.0 | 128.0 | 126.0 | 0.56 | 0.0 |
CL HOH |
4.067 3.121 |
CD NH1 |
CL O |
|||
| 2wr6 | 1 | P02753 | 99.43 | 1e-131 |
X-RAY |
2010-09-15 | ARG | A:6 | A:5 | 128.0 | 0.569 | B | -61.5 | 124.1 | 128.0 | 0.569 | 0.0 |
CL HOH |
4.114 3.361 |
CD NH1 |
CL O |
||
| 1aqb | 1 | P27485 | 92.9 | 7e-131 |
X-RAY |
1998-01-28 | ARG | A:5 | A:5 | 120.0 | 0.533 | B | -75.7 | 132.6 | 120.0 | 0.533 | 0.0 |
HOH |
3.316 |
NH2 |
O |
||
| 1hbq | 1 | P18902 | 92.35 | 4e-130 |
X-RAY |
1994-01-31 | ARG | A:5 | A:5 | 124.0 | 0.551 | -76.6 | 132.0 | 124.0 | 0.551 | 0.0 |
HOH |
3.341 |
CG |
O |
|||
| 1erb | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-01-31 | ARG | A:5 | A:5 | 124.0 | 0.551 | B | -78.0 | 131.2 | 124.0 | 0.551 | 0.0 |
HOH |
2.485 |
NH1 |
O |
||
| 1fel | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | ARG | A:5 | A:5 | 119.0 | 0.529 | B | -70.5 | 124.1 | 119.0 | 0.529 | 0.0 |
HOH |
3.213 |
CD |
O |
||
| 1fem | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | ARG | A:5 | A:5 | 129.0 | 0.573 | -67.7 | 122.2 | 129.0 | 0.573 | 0.0 |
HOH |
3.775 |
NH1 |
O |
|||
| 1fen | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-11-01 | ARG | A:5 | A:5 | 124.0 | 0.551 | -72.0 | 127.3 | 124.0 | 0.551 | 0.0 |
HOH |
2.673 |
NH1 |
O |
|||
| 1hbp | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
1994-01-31 | ARG | A:5 | A:5 | 127.0 | 0.564 | B | -75.6 | 129.6 | 127.0 | 0.564 | 0.0 |
HOH |
2.299 |
NH1 |
O |
||
| 1kt3 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | ARG | A:5 | A:5 | 130.0 | 0.578 | -64.7 | 123.5 | 130.0 | 0.578 | 0.0 |
HOH |
2.498 |
NH2 |
O |
|||
| 1kt4 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | ARG | A:5 | A:5 | 125.0 | 0.556 | B | -70.1 | 130.7 | 125.0 | 0.556 | 0.0 |
HOH |
2.512 |
NH2 |
O |
||
| 1kt6 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | ARG | A:5 | A:5 | 128.0 | 0.569 | B | -68.7 | 127.0 | 128.0 | 0.569 | 0.0 |
HOH |
3.728 |
N |
O |
||
| 1kt7 | 1 | P18902 | 92.35 | 6e-130 |
X-RAY |
2003-06-03 | ARG | A:5 | A:5 | 127.0 | 0.564 | B | -67.0 | 129.5 | 127.0 | 0.564 | 0.0 |
HOH |
3.528 |
CG |
O |
||
| 1kt5 | 1 | P18902 | 93.14 | 1e-124 |
X-RAY |
2003-06-03 | ARG | A:5 | A:5 | 118.0 | 0.524 | B | -71.6 | 128.9 | 118.0 | 0.524 | 0.0 |
HOH |
3.870 |
CG |
O |
||
| 1rlb | 2 | P02753 | 92.53 | 2e-123 |
X-RAY |
1996-04-11 | ARG | E:5 | E:5 | 126.0 | 0.56 | B | -93.4 | 130.6 | 126.0 | 0.56 | 0.0 | ||||||
| ARG | F:5 | F:5 | 135.0 | 0.6 | -111.4 | 144.2 | 135.0 | 0.6 | 0.0 | ||||||||||||||
| 1iiu | 1 | P41263 | 87.21 | 3e-116 |
X-RAY |
2002-01-16 | ARG | A:4 | A:5 | 123.0 | 0.547 | B | -78.7 | 136.1 | 123.0 | 0.547 | 0.0 |
HOH |
3.602 |
CD |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p02753-f1 | 1 | P02753 | 100.0 | 2e-152 | ARG | A:23 | A:23 | 118.0 | 0.524 | B | -68.7 | 136.3 | |