Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 101180418 . G A CCDS7479.1:NM_002079.2:c.263gCc>gTc_NP_002070.1:p.88A>V Homo sapiens glutamic-oxaloacetic transaminase 1 (GOT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3wzf 1 P17174 100.0 0.0 X-RAY
 2015-10-07 ALA A:87 A:87 0.0 0.0 H -79.0 -34.4 0.0 0.0 0.0
6dnd 1 P17174 100.0 0.0 X-RAY
 2018-11-14 ALA A:86 A:88 0.0 0.0 H -79.8 -43.2 0.0 0.0 0.0 HOH
 4.476
 CB
 O
ALA B:86 B:88 0.0 0.0 H -79.1 -43.8 NA NA NA
6lig 1 P17174 100.0 0.0 X-RAY
 2020-12-16 ALA A:86 A:88 0.0 0.0 H -85.6 -38.7 0.0 0.0 0.0 HOH
 5.569
 O
 O
ALA B:86 B:88 0.0 0.0 H -81.0 -38.1 0.0 0.0 0.0 HOH
 3.618
 CB
 O
6dnb 1 P17174 99.27 0.0 X-RAY
 2018-11-14 ALA A:86 A:88 0.0 0.0 H -71.3 -42.4 0.0 0.0 0.0 PG4
HOH
 5.050
4.602
 N
CB
 O1
O
6dna 1 P17174 99.75 0.0 X-RAY
 2018-11-14 ALA A:83 A:88 0.0 0.0 H -83.5 -42.7 0.0 0.0 0.0
ALA B:83 B:88 0.0 0.0 H -84.6 -40.6 NA NA NA
ALA C:83 C:88 0.0 0.0 H -84.1 -43.2 NA NA NA
ALA D:83 D:88 0.0 0.0 H -82.7 -42.7 NA NA NA
ALA E:83 E:88 0.0 0.0 H -83.8 -42.0 NA NA NA
ALA F:83 F:88 0.0 0.0 H -82.6 -42.5 NA NA NA
3ii0 1 P17174 100.0 0.0 X-RAY
 2009-08-11 ALA A:76 A:88 0.0 0.0 H -67.9 -50.4 0.0 0.0 0.0 EDO
HOH
 9.538
4.805
 CB
CB
 O2
O
ALA B:76 B:88 0.0 0.0 H -68.4 -48.1 NA NA NA
ALA C:76 C:88 0.0 0.0 H -75.8 -47.5 NA NA NA
ALA D:76 D:88 0.0 0.0 H -70.1 -50.1 NA NA NA
5toq 1 P00503 92.01 0.0 X-RAY
 2017-03-01 ALA A:89 A:87 0.0 0.0 H -69.2 -45.3 0.0 0.0 0.0 HOH
 4.254
 CB
 O
ALA B:89 B:87 0.0 0.0 H -70.3 -45.0 0.0 0.0 0.0 HOH
 3.218
 CB
 O
5vk7 1 P00503 92.01 0.0 X-RAY
 2017-11-01 ALA A:89 A:87 0.0 0.0 H -67.9 -44.4 0.0 0.0 0.0 HOH
 4.348
 CB
 O
ALA B:89 B:87 0.0 0.0 H -72.6 -41.1 0.0 0.0 0.0 HOH
 4.211
 CB
 O
1ajr 1 P00503 91.99 0.0 X-RAY
 1997-08-20 ALA A:87 A:87 0.0 0.0 H -71.6 -42.8 0.0 0.0 0.0 HOH
 4.224
 CB
 O
ALA B:87 B:87 0.0 0.0 H -68.4 -49.7 0.0 0.0 0.0 HOH
 4.319
 CB
 O
1ajs 1 P00503 91.99 0.0 X-RAY
 1997-08-20 ALA A:87 A:87 0.0 0.0 H -72.7 -44.8 0.0 0.0 0.0 HOH
 4.538
 CB
 O
1ajs 2 P00503 91.99 0.0 X-RAY
 1997-08-20 ALA B:87 B:87 0.0 0.0 H -71.2 -46.1 0.0 0.0 0.0 HOH
 4.387
 CB
 O
5vjz 1 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 ALA A:87 A:87 0.0 0.0 H -79.3 -39.4 0.0 0.0 0.0
5vjz 2 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 ALA B:87 B:87 0.0 0.0 H -69.9 -44.2 NA NA NA
5tor 1 P00503 91.77 0.0 X-RAY
 2017-03-01 ALA A:89 A:87 0.0 0.0 H -69.1 -46.1 0.0 0.0 0.0 HOH
 4.216
 CB
 O
ALA B:89 B:87 0.0 0.0 H -72.1 -42.1 0.0 0.0 0.0 HOH
 4.422
 CB
 O
5ton 1 P00503 91.77 0.0 X-RAY
 2017-03-01 ALA A:89 A:87 0.0 0.0 H -68.5 -44.6 0.0 0.0 0.0 HOH
 4.283
 CB
 O
ALA B:89 B:87 0.0 0.0 H -72.6 -43.1 0.0 0.0 0.0 HOH
 4.496
 CB
 O
5tot 1 P00503 91.53 0.0 X-RAY
 2017-03-01 ALA A:89 A:87 0.0 0.0 H -69.4 -44.2 0.0 0.0 0.0 HOH
 4.264
 CB
 O
ALA B:89 B:87 0.0 0.0 H -71.0 -45.6 0.0 0.0 0.0 HOH
 4.563
 CB
 O
2cst 1 P00504 80.44 0.0 X-RAY
 1994-11-30 ALA A:86 A:87 3.0 0.026 H -69.2 -45.4 3.0 0.026 0.0 HOH
 3.167
 O
 O
ALA B:86 B:87 3.0 0.026 H -74.5 -44.0 3.0 0.026 0.0 HOH
 2.995
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p17174-f1 1 P17174 100.0 0.0 ALA A:88 A:88 0.0 0.0 H -70.0 -43.5