Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 101180427 . G A CCDS7479.1:NM_002079.2:c.254tCt>tTt_NP_002070.1:p.85S>F Homo sapiens glutamic-oxaloacetic transaminase 1 (GOT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3wzf 1 P17174 100.0 0.0 X-RAY
 2015-10-07 SER A:84 A:84 5.0 0.043 H -59.6 -41.8 5.0 0.043 0.0
6dnd 1 P17174 100.0 0.0 X-RAY
 2018-11-14 SER A:83 A:85 4.0 0.035 H -62.6 -38.8 4.0 0.035 0.0 HOH
 7.436
 N
 O
SER B:83 B:85 4.0 0.035 H -62.0 -39.8 NA NA NA
6lig 1 P17174 100.0 0.0 X-RAY
 2020-12-16 SER A:83 A:85 4.0 0.035 H -66.7 -36.0 4.0 0.035 0.0 HOH
 7.288
 O
 O
SER B:83 B:85 4.0 0.035 H -74.9 -31.0 4.0 0.035 0.0 HOH
 6.439
 N
 O
6dnb 1 P17174 99.27 0.0 X-RAY
 2018-11-14 SER A:83 A:85 3.0 0.026 H -63.4 -42.4 3.0 0.026 0.0 PG4
HOH
 5.853
2.999
 O
OG
 O1
O
6dna 1 P17174 99.75 0.0 X-RAY
 2018-11-14 SER A:80 A:85 5.0 0.043 H -60.1 -39.1 5.0 0.043 0.0
SER B:80 B:85 5.0 0.043 H -59.1 -40.5 NA NA NA
SER C:80 C:85 4.0 0.035 H -60.4 -39.2 NA NA NA
SER D:80 D:85 6.0 0.052 H -56.9 -42.3 NA NA NA
SER E:80 E:85 4.0 0.035 H -60.1 -39.5 NA NA NA
SER F:80 F:85 4.0 0.035 H -60.1 -39.7 NA NA NA
3ii0 1 P17174 100.0 0.0 X-RAY
 2009-08-11 SER A:73 A:85 4.0 0.035 H -64.0 -36.6 4.0 0.035 0.0 EDO
HOH
 3.467
6.599
 OG
OG
 O2
O
SER B:73 B:85 4.0 0.035 H -73.2 -34.4 NA NA NA
SER C:73 C:85 4.0 0.035 H -59.3 -34.8 NA NA NA
SER D:73 D:85 4.0 0.035 H -62.4 -39.0 NA NA NA
5toq 1 P00503 92.01 0.0 X-RAY
 2017-03-01 SER A:86 A:84 4.0 0.035 H -65.1 -37.2 4.0 0.035 0.0 HOH
 2.875
 OG
 O
SER B:86 B:84 5.0 0.043 H -65.4 -35.8 5.0 0.043 0.0 HOH
 2.882
 OG
 O
5vk7 1 P00503 92.01 0.0 X-RAY
 2017-11-01 SER A:86 A:84 4.0 0.035 H -65.6 -37.3 4.0 0.035 0.0 HOH
 3.190
 OG
 O
SER B:86 B:84 4.0 0.035 H -62.7 -42.5 4.0 0.035 0.0 HOH
 3.221
 OG
 O
1ajr 1 P00503 91.99 0.0 X-RAY
 1997-08-20 SER A:84 A:84 5.0 0.043 H -64.8 -42.3 5.0 0.043 0.0 HOH
 2.987
 OG
 O
SER B:84 B:84 5.0 0.043 H -64.9 -40.5 5.0 0.043 0.0 HOH
 2.957
 OG
 O
1ajs 1 P00503 91.99 0.0 X-RAY
 1997-08-20 SER A:84 A:84 5.0 0.043 H -62.3 -40.9 5.0 0.043 0.0 HOH
 2.933
 OG
 O
1ajs 2 P00503 91.99 0.0 X-RAY
 1997-08-20 SER B:84 B:84 5.0 0.043 H -63.6 -41.3 5.0 0.043 0.0 HOH
 2.985
 OG
 O
5vjz 1 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 SER A:84 A:84 0.0 0.0 H -60.5 -40.9 0.0 0.0 0.0
5vjz 2 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 SER B:84 B:84 0.0 0.0 H -64.1 -39.7 NA NA NA
5tor 1 P00503 91.77 0.0 X-RAY
 2017-03-01 SER A:86 A:84 4.0 0.035 H -66.3 -36.1 4.0 0.035 0.0 HOH
 2.919
 OG
 O
SER B:86 B:84 5.0 0.043 H -65.5 -37.0 5.0 0.043 0.0 HOH
 3.036
 OG
 O
5ton 1 P00503 91.77 0.0 X-RAY
 2017-03-01 SER A:86 A:84 4.0 0.035 H -64.8 -36.5 4.0 0.035 0.0 HOH
 2.882
 OG
 O
SER B:86 B:84 4.0 0.035 H -65.4 -35.8 4.0 0.035 0.0 HOH
 2.932
 OG
 O
5tot 1 P00503 91.53 0.0 X-RAY
 2017-03-01 SER A:86 A:84 4.0 0.035 H -63.2 -37.2 4.0 0.035 0.0 HOH
 2.909
 OG
 O
SER B:86 B:84 5.0 0.043 H -64.8 -33.7 5.0 0.043 0.0 HOH
 2.977
 OG
 O
2cst 1 P00504 80.44 0.0 X-RAY
 1994-11-30 SER A:83 A:84 6.0 0.052 H -64.3 -34.3 6.0 0.052 0.0 HOH
 4.440
 CB
 O
SER B:83 B:84 4.0 0.035 H -63.3 -36.6 4.0 0.035 0.0 HOH
 3.524
 OG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p17174-f1 1 P17174 100.0 0.0 SER A:85 A:85 4.0 0.035 H -62.4 -39.0