Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 101180501 . C A CCDS7479.1:NM_002079.2:c.180aaG>aaT_NP_002070.1:p.60K>N Homo sapiens glutamic-oxaloacetic transaminase 1 (GOT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3wzf 1 P17174 100.0 0.0 X-RAY
 2015-10-07 LYS A:59 A:59 124.0 0.62 H -63.0 -43.6 124.0 0.62 0.0
6dnd 1 P17174 100.0 0.0 X-RAY
 2018-11-14 LYS A:58 A:60 94.0 0.47 H -62.7 -41.4 94.0 0.47 0.0 HOH
 2.532
 O
 O
LYS B:58 B:60 125.0 0.625 H -63.5 -39.0 NA NA NA
6lig 1 P17174 100.0 0.0 X-RAY
 2020-12-16 LYS A:58 A:60 105.0 0.525 H -61.6 -40.1 105.0 0.525 0.0 HOH
 2.453
 NZ
 O
LYS B:58 B:60 131.0 0.655 H -72.0 -35.3 131.0 0.655 0.0 HOH
 3.136
 NZ
 O
6dnb 1 P17174 99.27 0.0 X-RAY
 2018-11-14 LYS A:58 A:60 114.0 0.57 H -57.4 -46.8 114.0 0.57 0.0 HOH
 2.619
 NZ
 O
6dna 1 P17174 99.75 0.0 X-RAY
 2018-11-14 LYS A:55 A:60 126.0 0.63 H -57.0 -42.7 126.0 0.63 0.0
LYS B:55 B:60 105.0 0.525 H -59.2 -40.4 NA NA NA
LYS C:55 C:60 126.0 0.63 H -61.3 -38.7 NA NA NA
LYS D:55 D:60 117.0 0.585 H -58.9 -41.2 NA NA NA
LYS E:55 E:60 113.0 0.565 H -58.8 -41.5 NA NA NA
LYS F:55 F:60 114.0 0.57 H -58.7 -41.2 NA NA NA
3ii0 1 P17174 100.0 0.0 X-RAY
 2009-08-11 LYS A:48 A:60 118.0 0.59 H -61.5 -38.3 118.0 0.59 0.0 HOH
 5.877
 O
 O
LYS B:48 B:60 121.0 0.605 H -61.5 -42.8 NA NA NA
LYS C:48 C:60 95.0 NA H -57.6 -48.5 NA NA NA
LYS D:48 D:60 111.0 0.555 H -55.0 -44.4 NA NA NA
5toq 1 P00503 92.01 0.0 X-RAY
 2017-03-01 ARG A:61 A:59 109.0 0.484 H -62.3 -40.9 109.0 0.484 0.0 HOH
 2.743
 O
 O
ARG B:61 B:59 128.0 0.569 H -60.4 -44.1 128.0 0.569 0.0 HOH
 2.658
 O
 O
5vk7 1 P00503 92.01 0.0 X-RAY
 2017-11-01 ARG A:61 A:59 113.0 0.502 H -56.7 -41.4 113.0 0.502 0.0 HOH
 3.236
 NH2
 O
ARG B:61 B:59 115.0 0.511 H -58.8 -44.0 115.0 0.511 0.0 HOH
 5.957
 O
 O
1ajr 1 P00503 91.99 0.0 X-RAY
 1997-08-20 ARG A:59 A:59 89.0 0.396 H -64.3 -43.1 89.0 0.396 0.0 HOH
 5.931
 O
 O
ARG B:59 B:59 110.0 0.489 H -62.6 -40.0 110.0 0.489 0.0 HOH
 2.937
 NH2
 O
1ajs 1 P00503 91.99 0.0 X-RAY
 1997-08-20 ARG A:59 A:59 108.0 0.48 H -60.8 -47.0 108.0 0.48 0.0 HOH
 6.117
 C
 O
1ajs 2 P00503 91.99 0.0 X-RAY
 1997-08-20 ARG B:59 B:59 108.0 0.48 H -64.0 -40.1 108.0 0.48 0.0 HOH
 3.421
 NH2
 O
5vjz 1 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 ARG A:59 A:59 118.0 0.524 H -55.6 -46.1 118.0 0.524 0.0
5vjz 2 P00503 91.99 0.0 NEUTRON DIFFRACTION
X-RAY
 2017-11-01 ARG B:59 B:59 111.0 0.493 H -60.0 -40.7 NA NA NA
5tor 1 P00503 91.77 0.0 X-RAY
 2017-03-01 ARG A:61 A:59 95.0 0.422 H -64.2 -39.4 95.0 0.422 0.0 HOH
 2.781
 O
 O
ARG B:61 B:59 108.0 0.48 H -65.7 -38.4 108.0 0.48 0.0 HOH
 2.667
 O
 O
5ton 1 P00503 91.77 0.0 X-RAY
 2017-03-01 ARG A:61 A:59 91.0 0.404 H -62.0 -41.3 91.0 0.404 0.0 HOH
 2.832
 NE
 O
ARG B:61 B:59 114.0 0.507 H -61.9 -42.0 114.0 0.507 0.0 HOH
 2.709
 O
 O
5tot 1 P00503 91.53 0.0 X-RAY
 2017-03-01 ARG A:61 A:59 112.0 0.498 H -62.5 -40.9 112.0 0.498 0.0 HOH
 2.726
 O
 O
ARG B:61 B:59 102.0 0.453 H -62.8 -41.6 102.0 0.453 0.0 HOH
 2.681
 O
 O
2cst 1 P00504 80.44 0.0 X-RAY
 1994-11-30 LEU A:58 A:59 97.0 0.571 H -58.8 -50.2 97.0 0.571 0.0 HOH
 2.838
 O
 O
LEU B:58 B:59 95.0 0.559 H -54.3 -51.9 95.0 0.559 0.0 HOH
 2.802
 CD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p17174-f1 1 P17174 100.0 0.0 LYS A:60 A:60 106.0 0.53 H -61.5 -47.1