Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 103340128 . C A CCDS7513.1:NM_001174084.1:c.1240Gca>Tca_NP_001167555.1:p.414A>S Homo sapiens DNA polymerase lambda (POLL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4xq8 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:173 B:414 4.0 0.035 E -84.6 131.2 4.0 0.035 0.0 DC
9.395
C
C5'
ALA B:173 A:414 1.0 0.009 E -98.5 129.6 NA NA NA
5ca7 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:173 B:414 3.0 0.026 E -77.7 132.1 3.0 0.026 0.0 DC
9.505
C
O3'
ALA B:173 A:414 1.0 0.009 E -90.5 128.0 NA NA NA
5iii 1 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA A:173 A:414 4.0 0.035 E -75.2 125.3 4.0 0.035 0.0 DTP
MG
HOH
8.428
8.572
2.794
C
C
O
O1B
MG
O
5iij 1 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA A:173 A:414 5.0 0.043 E -74.2 126.3 5.0 0.043 0.0 DCT
MG
HOH
8.493
8.680
2.754
C
C
O
O1B
MG
O
5iik 1 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA A:173 A:414 6.0 0.052 E -81.1 132.6 6.0 0.052 0.0 DT
CIT
NA
HOH
9.135
8.693
8.291
2.619
C
C
C
O
C5'
O3
NA
O
5iil 1 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA A:173 A:414 5.0 0.043 E -82.8 134.2 5.0 0.043 0.0 DT
CIT
NA
HOH
9.130
8.708
8.276
2.612
C
C
C
O
C5'
O3
NA
O
5iim 1 Q9UGP5 100.0 0.0 X-RAY
2016-09-07 ALA A:173 A:414 7.0 0.061 E -80.3 133.0 7.0 0.061 0.0 DUP
NA
HOH
8.505
8.458
2.628
C
C
O
O2B
NA
O
5iin 1 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA A:173 A:414 6.0 0.052 E -82.1 131.8 6.0 0.052 0.0 DUP
MG
HOH
8.472
8.411
2.820
C
C
O
O1B
MG
O
5iio 4 Q9UGP5 100.0 0.0 X-RAY
2016-08-17 ALA M:173 A:414 4.0 0.035 E -80.4 134.3 4.0 0.035 0.0 HOH
2.727
O
O
ALA N:173 E:414 9.0 0.078 E -83.2 129.8 NA NA NA
ALA O:173 I:414 7.0 0.061 E -82.4 129.2 NA NA NA
ALA P:173 M:414 6.0 0.052 E -78.2 138.6 NA NA NA
1xsl 4 Q9UGP5 100.0 0.0 X-RAY
2005-01-18 ALA M:174 A:414 5.0 0.043 E -84.3 134.7 5.0 0.043 0.0 HOH
2.782
O
O
ALA N:174 E:414 7.0 0.061 E -76.0 127.2 NA NA NA
ALA O:174 I:414 5.0 0.043 E -78.7 127.6 NA NA NA
ALA P:174 M:414 7.0 0.061 E -80.5 132.1 NA NA NA
2bcq 4 Q9UGP5 100.0 0.0 X-RAY
2006-03-07 ALA D:174 A:414 7.0 0.061 E -83.6 126.5 7.0 0.061 0.0 DG
MG
PPV
HOH
9.108
8.614
8.491
2.763
C
C
C
O
C5'
MG
O12
O
2bcr 4 Q9UGP5 100.0 0.0 X-RAY
2006-03-07 ALA D:174 A:414 8.0 0.07 E -81.0 130.5 8.0 0.07 0.0 DG
MG
PPV
HOH
9.133
8.476
8.624
2.709
C
C
C
O
C5'
MG
O12
O
2bcs 4 Q9UGP5 100.0 0.0 X-RAY
2006-03-07 ALA D:174 A:414 7.0 0.061 E -83.7 130.9 7.0 0.061 0.0 DG
MG
PPV
HOH
9.140
8.417
8.590
2.483
C
C
C
O
C5'
MG
O12
O
2bcu 4 Q9UGP5 100.0 0.0 X-RAY
2006-03-07 ALA D:174 A:414 6.0 0.052 E -84.7 129.4 6.0 0.052 0.0 DG
NA
PPV
HOH
9.124
8.460
8.560
2.825
C
C
C
O
C5'
NA
O12
O
2bcv 4 Q9UGP5 100.0 0.0 X-RAY
2006-03-07 ALA D:174 A:414 11.0 0.096 E -80.2 128.7 11.0 0.096 0.0 MG
TTP
HOH
8.739
8.758
2.767
C
C
O
MG
O1B
O
2gws 4 Q9UGP5 100.0 0.0 X-RAY
2006-09-05 ALA M:174 A:414 6.0 0.052 E -90.9 129.0 6.0 0.052 0.0 HOH
2.718
O
O
ALA N:174 E:414 9.0 0.078 E -80.9 119.0 NA NA NA
ALA O:174 I:414 6.0 0.052 E -81.3 123.6 NA NA NA
ALA P:174 M:414 5.0 0.043 E -89.1 131.2 NA NA NA
4xrh 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:174 B:414 2.0 0.017 E -72.3 134.2 2.0 0.017 0.0 DC
9.432
C
O3'
ALA B:174 A:414 2.0 0.017 E -76.0 125.9 NA NA NA
5ddm 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:174 B:414 4.0 0.035 E -74.3 134.9 4.0 0.035 0.0 DC
9.586
C
C5'
ALA B:174 A:414 2.0 0.017 E -78.7 138.7 NA NA NA
5ddy 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:174 A:414 2.0 0.017 E -85.6 120.6 2.0 0.017 0.0 MG
DCP
7.669
8.586
C
C
MG
O2B
ALA B:174 C:414 5.0 0.043 E -77.3 121.0 NA NA NA
ALA C:174 E:414 3.0 0.026 E -87.8 129.2 NA NA NA
ALA D:174 G:414 2.0 0.017 E -70.5 133.1 NA NA NA
3c5g 1 Q9UGP5 99.7 0.0 X-RAY
2008-07-29 ALA A:174 A:414 5.0 0.043 E -75.3 122.7 5.0 0.043 0.0 MG
D3T
HOH
8.650
8.586
2.635
C
C
O
MG
O1B
O
ALA E:174 B:414 3.0 0.026 E -80.1 128.6 NA NA NA
5chg 1 Q9UGP5 99.7 0.0 X-RAY
2016-02-24 ALA A:173 A:414 3.0 0.026 E -79.2 122.9 3.0 0.026 0.0 DC
9.367
C
C5'
ALA B:173 B:414 2.0 0.017 E -88.0 133.8 NA NA NA
5cj7 1 Q9UGP5 99.7 0.0 X-RAY
2016-02-24 ALA A:173 A:414 2.0 0.017 E -68.5 123.7 2.0 0.017 0.0 DC
9.489
C
C5'
ALA B:173 B:414 2.0 0.017 E -75.1 133.4 NA NA NA
5cp2 1 Q9UGP5 99.7 0.0 X-RAY
2016-02-24 ALA A:173 A:414 1.0 0.009 E -83.3 129.8 1.0 0.009 0.0 HOH
2.879
O
O
ALA B:173 B:414 3.0 0.026 E -75.6 131.3 NA NA NA
5cr0 1 Q9UGP5 99.7 0.0 X-RAY
2016-02-24 ALA A:173 A:414 4.0 0.035 E -68.3 137.7 4.0 0.035 0.0 DC
9.255
C
O3'
ALA B:173 B:414 2.0 0.017 E -81.2 120.1 NA NA NA
3c5f 4 Q9UGP5 99.7 0.0 X-RAY
2008-09-02 ALA G:174 A:414 6.0 0.052 E -79.4 130.0 6.0 0.052 0.0 HOH
2.886
O
O
ALA H:174 B:414 3.0 0.026 E -79.2 127.0 NA NA NA
1xsn 4 Q9UGP5 99.7 0.0 X-RAY
2005-01-18 ALA D:174 A:414 9.0 0.078 E -84.5 125.2 9.0 0.078 0.0 MG
D3T
HOH
8.567
8.590
2.764
C
C
O
MG
O1B
O
1xsp 4 Q9UGP5 99.7 0.0 X-RAY
2005-01-18 ALA D:174 A:414 6.0 0.052 E -86.9 126.4 6.0 0.052 0.0 DG
NA
PPV
HOH
9.188
8.421
8.516
2.663
C
C
C
O
C5'
NA
O12
O
2pfn 4 Q9UGP5 99.7 0.0 X-RAY
2007-05-15 ALA D:174 A:414 5.0 0.043 E -76.3 126.7 5.0 0.043 0.0 MG
NA
DUP
HOH
8.532
9.922
8.384
2.747
C
C
C
O
MG
NA
O2B
O
2pfo 4 Q9UGP5 99.7 0.0 X-RAY
2007-05-15 ALA D:174 A:414 5.0 0.043 E -85.5 126.4 5.0 0.043 0.0 MG
MN
DUP
HOH
8.496
9.910
8.346
2.838
C
C
C
O
MG
MN
O2B
O
2pfp 4 Q9UGP5 99.7 0.0 X-RAY
2007-05-15 ALA D:174 A:414 6.0 0.052 E -83.4 133.5 6.0 0.052 0.0 MG
DCP
HOH
8.445
8.468
2.821
C
C
O
MG
O2B
O
2pfq 4 Q9UGP5 99.7 0.0 X-RAY
2007-05-15 ALA D:174 A:414 8.0 0.07 E -110.4 121.9 8.0 0.07 0.0 DC
MG
MN
DCP
PPV
HOH
9.028
8.478
8.421
8.349
8.389
4.619
C
C
C
C
C
C
C5'
MG
MN
O2B
O11
O
3hw8 1 Q9UGP5 99.7 0.0 X-RAY
2009-08-25 ALA A:174 A:414 7.0 0.061 E -77.7 114.7 7.0 0.061 0.0 MG
D3T
HOH
8.574
8.528
2.764
C
C
O
MG
O1B
O
3hwt 1 Q9UGP5 99.7 0.0 X-RAY
2009-08-25 ALA A:174 A:414 9.0 0.078 E -80.3 124.3 9.0 0.078 0.0 D3T
MG
HOH
8.605
8.512
2.506
C
C
O
O1B
MG
O
1rzt 4 Q9UGP5 100.0 0.0 X-RAY
2004-03-02 ALA M:170 A:414 5.0 0.043 E -81.7 130.6 5.0 0.043 0.0 HOH
2.728
O
O
ALA N:170 E:414 7.0 0.061 E -88.0 129.9 NA NA NA
ALA O:170 I:414 6.0 0.052 E -79.8 124.6 NA NA NA
ALA P:170 M:414 7.0 0.061 E -79.6 131.7 NA NA NA
4k4g 1 Q9UGP5 100.0 0.0 X-RAY
2014-07-16 ALA A:171 A:414 6.0 0.052 E -89.2 128.4 6.0 0.052 0.0 1S0
CA
HOH
8.403
8.387
2.783
C
C
O
OAE
CA
O
ALA E:171 E:414 6.0 0.052 E -77.9 123.2 NA NA NA
ALA I:171 I:414 3.0 0.026 E -71.3 128.3 NA NA NA
ALA M:171 M:414 6.0 0.052 E -76.3 132.1 NA NA NA
4k4h 1 Q9UGP5 100.0 0.0 X-RAY
2014-07-16 ALA A:171 A:414 5.0 0.043 E -85.4 131.4 5.0 0.043 0.0 1RZ
CA
CA
HOH
8.553
8.383
5.267
2.640
C
C
N
O
O2B
CA
CA
O
ALA E:171 E:414 4.0 0.035 E -82.5 126.3 NA NA NA
ALA I:171 I:414 1.0 0.009 E -73.8 132.8 NA NA NA
ALA M:171 M:414 4.0 0.035 E -75.4 135.2 NA NA NA
4k4i 1 Q9UGP5 100.0 0.0 X-RAY
2014-07-16 ALA A:171 A:414 6.0 0.052 E -89.0 133.1 6.0 0.052 0.0 1RY
CA
CA
HOH
8.698
8.425
5.024
2.684
C
C
N
O
OAE
CA
CA
O
ALA E:171 E:414 5.0 0.043 E -77.8 127.9 NA NA NA
ALA I:171 I:414 3.0 0.026 E -69.8 130.2 NA NA NA
ALA M:171 M:414 5.0 0.043 E -74.1 134.1 NA NA NA
3hx0 1 Q9UGP5 98.8 0.0 X-RAY
2009-08-25 ALA A:174 A:414 9.0 0.078 E -84.1 121.0 9.0 0.078 0.0 D3T
MG
HOH
8.338
8.605
7.416
C
C
C
O1B
MG
O
ALA E:174 F:414 5.0 0.043 E -83.2 120.5 NA NA NA
ALA I:174 K:414 6.0 0.052 E -79.7 124.8 NA NA NA
ALA M:174 P:414 8.0 0.07 E -88.6 115.4 NA NA NA
5dkw 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:166 A:414 7.0 0.061 E -96.1 125.6 7.0 0.061 0.0 DTP
CA
HOH
8.694
8.183
2.673
C
C
O
O1B
CA
O
ALA B:166 B:414 5.0 0.043 E -102.7 131.9 NA NA NA
5cb1 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-24 ALA A:165 A:414 2.0 0.017 E -77.9 140.3 2.0 0.017 0.0
ALA B:165 B:414 1.0 0.009 E -75.0 137.6 NA NA NA
4x5v 1 Q9UGP5 100.0 0.0 X-RAY
2015-10-28 ALA A:164 A:414 8.0 0.07 E -83.9 128.9 8.0 0.07 0.0 8OG
NA
CIT
HOH
8.812
8.193
8.669
2.875
C
C
C
O
O3'
NA
O4
O
4xa5 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-10 ALA A:164 A:414 3.0 0.026 E -74.7 130.8 3.0 0.026 0.0 8DG
MG
ACT
HOH
8.391
8.617
8.672
2.818
C
C
CB
O
O2B
MG
O
O
4xus 1 Q9UGP5 100.0 0.0 X-RAY
2016-02-03 ALA A:164 A:414 8.0 0.07 E -84.4 126.3 8.0 0.07 0.0 TTP
MG
HOH
8.482
8.510
4.025
C
C
CB
O2B
MG
O
5cwr 1 Q9UGP5 99.69 0.0 X-RAY
2016-02-24 ALA A:165 A:414 8.0 0.07 E -76.1 127.7 8.0 0.07 0.0 DCP
CA
HOH
8.641
8.459
2.727
C
C
N
O2B
CA
O
ALA D:165 B:414 8.0 0.07 E -73.1 130.4 NA NA NA
3mda 1 Q9UGP5 100.0 0.0 X-RAY
2010-04-28 ALA A:164 A:414 6.0 0.052 E -83.8 132.4 6.0 0.052 0.0 CAR
PPV
MG
HOH
8.867
8.484
8.332
2.933
C
C
C
O
C5'
O31
MG
O
3mdc 1 Q9UGP5 100.0 0.0 X-RAY
2010-04-28 ALA A:164 A:414 9.0 0.078 E -73.5 126.0 9.0 0.078 0.0 GTF
MG
MG
HOH
8.574
9.917
8.502
2.643
C
C
C
O
O1B
MG
MG
O
3mgh 1 Q9UGP5 97.6 0.0 X-RAY
2010-05-19 ALA A:173 A:414 4.0 0.035 E -80.1 128.9 4.0 0.035 0.0 HOH
2.701
O
O
ALA E:173 C:414 4.0 0.035 E -73.9 127.7 NA NA NA
3mgi 1 Q9UGP5 97.6 0.0 X-RAY
2010-05-19 ALA A:173 A:414 7.0 0.061 E -82.4 122.7 7.0 0.061 0.0 D3T
MG
HOH
8.505
8.474
3.263
C
C
N
O1B
MG
O
3pml 1 Q9UGP5 97.6 0.0 X-RAY
2011-01-26 ALA A:173 A:414 3.0 0.026 E -76.4 124.9 3.0 0.026 0.0 1GC
MG
HOH
8.400
8.315
4.104
C
C
N
O2B
MG
O
ALA B:173 B:414 2.0 0.017 E -84.9 133.8 NA NA NA
3pmn 1 Q9UGP5 97.6 0.0 X-RAY
2011-02-02 ALA A:173 A:414 1.0 0.009 E -79.3 119.9 1.0 0.009 0.0 1GC
MG
HOH
8.491
8.605
4.264
C
C
N
O2B
MG
O
3pnc 1 Q9UGP5 97.6 0.0 X-RAY
2011-02-02 ALA A:173 A:414 2.0 0.017 E -84.0 121.4 2.0 0.017 0.0 1GC
MG
NA
HOH
8.588
8.531
9.927
2.861
C
C
C
O
O2B
MG
NA
O
3upq 1 Q9UGP5 97.6 0.0 X-RAY
2012-05-23 ALA A:173 A:414 3.0 0.026 E -72.8 120.1 3.0 0.026 0.0 ZAN
MN
MN
SO4
HOH
8.507
8.368
9.945
6.939
2.691
C
C
C
O
O
O1B
MN
MN
O4
O
3uq0 1 Q9UGP5 97.6 0.0 X-RAY
2012-05-23 ALA A:173 A:414 1.0 0.009 E -74.3 128.9 1.0 0.009 0.0 A
CL
HOH
9.112
8.170
2.656
C
O
O
O3'
CL
O
3uq2 1 Q9UGP5 97.31 0.0 X-RAY
2012-05-23 ALA A:173 A:414 9.0 0.078 E -79.3 135.4 9.0 0.078 0.0 DA
PPV
MG
HOH
9.291
8.844
8.523
2.701
C
C
C
O
C5'
O21
MG
O
4fo6 1 Q9UGP5 97.31 0.0 X-RAY
2012-07-11 ALA A:173 A:414 10.0 0.087 E -81.6 123.9 10.0 0.087 0.0 DT
DG
DC
DA
MG
F2A
HOH
9.031
6.678
5.665
9.800
8.854
8.774
2.678
N
N
N
N
C
C
O
O4
O6
N4
N6
MG
O2B
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9ugp5-f1 1 Q9UGP5 100.0 0.0 ALA A:414 A:414 4.0 0.035 E -66.9 128.4