Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 106019356 | . | C | A | CCDS7555.1:NM_004832.2:c.166Ctg>Atg_NP_004823.1:p.56L>M | Homo sapiens glutathione S-transferase omega 1 (GSTO1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4yqm | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2016-10-12 | LEU | A:59 | A:56 | 51.0 | 0.3 | T | -71.0 | -15.3 | 51.0 | 0.3 | 0.0 |
4G9 MES HOH |
4.111 9.126 3.548 |
CD1 CD1 CD2 |
C7 O1S O |
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| LEU | B:59 | B:56 | 53.0 | 0.312 | T | -81.3 | 0.6 | NA | NA | NA | |||||||||||||
| LEU | C:59 | C:56 | 51.0 | 0.3 | T | -61.0 | -24.2 | NA | NA | NA | |||||||||||||
| 4yqu | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2016-10-12 | LEU | A:59 | A:56 | 34.0 | 0.2 | T | -71.6 | -7.1 | 34.0 | 0.2 | 0.0 |
4GB MES HOH |
3.942 9.547 3.811 |
CD1 CD1 CD1 |
C3 O2S O |
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| LEU | B:59 | B:56 | 54.0 | 0.318 | T | -69.1 | -13.3 | 54.0 | 0.318 | 0.0 |
4GB MES HOH |
3.814 9.371 3.755 |
CD1 CD1 CB |
C3 O1S O |
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| 4yqv | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2016-10-12 | LEU | A:59 | A:56 | 53.0 | 0.312 | T | -70.1 | -15.4 | 53.0 | 0.312 | 0.0 |
4GG HOH |
3.678 3.553 |
CD1 CD2 |
C1 O |
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| LEU | B:59 | B:56 | 50.0 | 0.294 | T | -66.9 | -13.6 | NA | NA | NA | |||||||||||||
| LEU | C:59 | C:56 | 53.0 | 0.312 | S | -68.0 | -19.2 | NA | NA | NA | |||||||||||||
| 6mhb | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2019-02-20 | LEU | A:59 | A:56 | 40.0 | NA | G | -71.2 | -17.2 | 40.0 | NA | NA |
JR7 |
4.427 |
CB |
H3 |
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| LEU | B:59 | B:56 | 82.0 | NA | G | -69.6 | -17.8 | NA | NA | NA | |||||||||||||
| LEU | C:59 | C:56 | 40.0 | 0.235 | G | -71.9 | -14.3 | 40.0 | 0.235 | 0.0 |
JR7 MES HOH |
3.317 7.323 3.877 |
CD1 CD1 CB |
H3 O3S O |
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| LEU | D:59 | D:56 | 47.0 | 0.276 | G | -70.9 | -17.0 | NA | NA | NA | |||||||||||||
| LEU | E:59 | E:56 | 112.0 | NA | -70.8 | 360.0 | NA | NA | NA | ||||||||||||||
| LEU | F:59 | F:56 | 62.0 | 0.365 | T | -79.6 | 0.3 | NA | NA | NA | |||||||||||||
| 6mhc | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2019-02-20 | LEU | A:59 | A:56 | 25.0 | 0.147 | T | -67.2 | -10.8 | 25.0 | 0.147 | 0.0 |
JRM DMS MES HOH |
2.858 3.637 9.323 2.708 |
CD1 O CD1 O |
H3 C1 O2S O |
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| LEU | B:59 | B:56 | 26.0 | 0.153 | T | -62.2 | -20.9 | 26.0 | 0.153 | 0.0 |
JRM DMS MES HOH |
2.730 3.781 9.266 3.581 |
CD1 O CD1 CD2 |
H3 C1 O1S O |
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| 6mhd | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2019-02-20 | LEU | A:59 | A:56 | 31.0 | 0.182 | T | -66.3 | -20.2 | 31.0 | 0.182 | 0.0 |
JRD MES ACN HOH |
2.902 9.352 9.311 2.837 |
CD1 CD1 CD1 O |
H2 O3S H12 O |
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| LEU | B:59 | B:56 | 30.0 | 0.176 | T | -63.7 | -14.5 | 30.0 | 0.176 | 0.0 |
JRD MES ACN HOH |
3.085 8.916 8.690 3.711 |
CD1 CD1 CD1 CD1 |
H2 O2S O O |
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| 1eem | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2000-08-11 | LEU | A:56 | A:56 | 30.0 | 0.176 | T | -64.1 | -21.7 | 30.0 | 0.176 | 0.0 |
GSH HOH |
3.697 3.692 |
CD1 O |
CB2 O |
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| 5v3q | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2017-12-20 | LEU | A:56 | A:56 | 47.0 | 0.276 | T | -75.8 | -15.0 | 47.0 | 0.276 | 0.0 |
MLX HOH |
3.610 3.771 |
CD1 CD2 |
C20 O |
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| 5yvn | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2018-11-28 | LEU | A:56 | A:56 | 33.0 | 0.194 | T | -70.8 | -16.1 | 33.0 | 0.194 | 0.0 |
GSH HOH |
3.613 2.929 |
CD1 O |
CB2 O |
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| 5yvo | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2018-11-28 | LEU | A:56 | A:56 | 48.0 | 0.282 | T | -73.6 | -13.3 | 48.0 | 0.282 | 0.0 |
MLX HOH |
3.441 3.780 |
CB CD1 |
N21 O |
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| 5ueh | 1 | P78417 | 100.0 | 0.0 |
X-RAY |
2018-01-17 | LEU | A:57 | A:56 | 33.0 | 0.194 | T | -76.0 | -15.9 | 33.0 | 0.194 | 0.0 |
85P HOH |
3.184 3.776 |
CD1 CD1 |
O22 O |
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| 6pnm | 1 | P78417 | 100.0 | 3e-180 |
X-RAY |
2019-07-24 | LEU | A:55 | A:56 | 29.0 | 0.171 | T | -77.7 | -11.5 | 29.0 | 0.171 | 0.0 |
XX0 TLA HOH |
3.539 6.787 3.530 |
CD1 CD1 C |
C1 O1 O |
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| 6pnn | 1 | P78417 | 100.0 | 3e-180 |
X-RAY |
2019-07-24 | LEU | A:55 | A:56 | 49.0 | 0.288 | T | -67.0 | -16.7 | 49.0 | 0.288 | 0.0 |
TLA OR7 HOH |
6.371 4.151 3.648 |
CD1 CD1 CD2 |
O1 CAA O |
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| 6pno | 1 | P78417 | 100.0 | 3e-180 |
X-RAY |
2019-07-24 | LEU | A:55 | A:56 | 49.0 | 0.288 | T | -75.6 | -10.4 | 49.0 | 0.288 | 0.0 |
ORM TLA HOH |
4.158 6.886 3.749 |
CD1 CD1 CD2 |
CAR O1 O |
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| 3vln | 1 | P78417 | 99.59 | 5e-180 |
X-RAY |
2012-05-16 | LEU | A:56 | A:56 | 25.0 | 0.147 | T | -67.2 | -14.2 | 25.0 | 0.147 | 0.0 |
ASC ACT HOH |
6.128 3.964 3.923 |
CD1 CD1 CD1 |
O2 O O |
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| 4is0 | 1 | P78417 | 99.59 | 5e-180 |
X-RAY |
2013-04-24 | LEU | A:56 | A:56 | 55.0 | 0.324 | T | -77.0 | -14.1 | 55.0 | 0.324 | 0.0 |
GDS HOH |
2.059 4.348 |
HB3 H |
HA1 O |
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| 3lfl | 1 | P78417 | 99.59 | 1e-178 |
X-RAY |
2010-11-24 | LEU | A:56 | A:56 | 56.0 | 0.329 | S | -76.3 | -16.8 | 56.0 | 0.329 | 0.0 |
GSH HOH |
3.649 4.146 |
CD1 N |
CB2 O |
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| LEU | B:56 | B:56 | 60.0 | 0.353 | S | -80.4 | -18.6 | NA | NA | NA | |||||||||||||
| LEU | C:56 | C:56 | 69.0 | 0.406 | T | -62.5 | -22.6 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p78417-f1 | 1 | P78417 | 100.0 | 0.0 | LEU | A:56 | A:56 | 49.0 | 0.288 | S | -76.4 | -13.8 | |