Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 106025890 . A C CCDS7555.1:NM_004832.2:c.514Atg>Ctg_NP_004823.1:p.172M>L Homo sapiens glutathione S-transferase omega 1 (GSTO1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yqm 1 P78417 100.0 0.0 X-RAY
 2016-10-12 MET A:175 A:172 2.0 0.011 H -55.3 -49.4 2.0 0.011 0.0 HOH
 7.692
 N
 O
MET B:175 B:172 1.0 0.005 H -47.0 -50.2 NA NA NA
MET C:175 C:172 5.0 0.027 H -46.4 -53.0 NA NA NA
4yqu 1 P78417 100.0 0.0 X-RAY
 2016-10-12 MET A:175 A:172 4.0 0.022 H -48.3 -52.2 4.0 0.022 0.0 HOH
 5.596
 N
 O
MET B:175 B:172 2.0 0.011 H -41.9 -55.4 2.0 0.011 0.0 HOH
 5.633
 N
 O
4yqv 1 P78417 100.0 0.0 X-RAY
 2016-10-12 MET A:175 A:172 3.0 0.016 H -47.4 -53.8 3.0 0.016 0.0 HOH
 3.889
 CG
 O
MET B:175 B:172 1.0 0.005 H -48.2 -51.6 NA NA NA
MET C:175 C:172 4.0 0.022 H -45.4 -53.5 NA NA NA
6mhb 1 P78417 100.0 0.0 X-RAY
 2019-02-20 MET A:175 A:172 4.0 0.022 H -42.7 -52.2 4.0 0.022 0.0 HOH
 7.877
 N
 O
MET B:175 B:172 4.0 0.022 H -42.0 -52.6 NA NA NA
MET C:175 C:172 3.0 0.016 H -41.4 -51.4 3.0 0.016 0.0 HOH
 7.877
 N
 O
MET D:175 D:172 4.0 0.022 H -42.3 -53.9 NA NA NA
MET E:175 E:172 4.0 0.022 H -41.7 -53.6 NA NA NA
MET F:175 F:172 3.0 0.016 H -41.9 -52.2 NA NA NA
6mhc 1 P78417 100.0 0.0 X-RAY
 2019-02-20 MET A:175 A:172 3.0 0.016 H -43.9 -56.5 3.0 0.016 0.0 HOH
 5.688
 N
 O
MET B:175 B:172 3.0 0.016 H -46.4 -53.3 3.0 0.016 0.0 HOH
 5.636
 N
 O
6mhd 1 P78417 100.0 0.0 X-RAY
 2019-02-20 MET A:175 A:172 4.0 0.022 H -45.2 -51.8 4.0 0.022 0.0 HOH
 5.666
 N
 O
MET B:175 B:172 3.0 0.016 H -48.0 -52.9 3.0 0.016 0.0 HOH
 5.608
 N
 O
1eem 1 P78417 100.0 0.0 X-RAY
 2000-08-11 MET A:172 A:172 2.0 0.011 H -38.0 -59.2 2.0 0.011 0.0 HOH
 5.673
 N
 O
5v3q 1 P78417 100.0 0.0 X-RAY
 2017-12-20 MET A:172 A:172 4.0 0.022 H -49.3 -48.6 4.0 0.022 0.0 HOH
 5.485
 N
 O
5yvn 1 P78417 100.0 0.0 X-RAY
 2018-11-28 MET A:172 A:172 1.0 0.005 H -51.0 -48.7 1.0 0.005 0.0 ACT
HOH
 4.156
5.520
 CG
N
 O
O
5yvo 1 P78417 100.0 0.0 X-RAY
 2018-11-28 MET A:172 A:172 1.0 0.005 H -49.2 -51.0 1.0 0.005 0.0 ACT
HOH
 3.959
5.525
 CG
N
 O
O
5ueh 1 P78417 100.0 0.0 X-RAY
 2018-01-17 MET A:173 A:172 4.0 0.022 H -53.1 -48.5 4.0 0.022 0.0 HOH
 5.481
 N
 O
6pnm 1 P78417 100.0 3e-180 X-RAY
 2019-07-24 MET A:171 A:172 4.0 0.022 H -52.1 -47.9 4.0 0.022 0.0 HOH
 4.205
 CG
 O
6pnn 1 P78417 100.0 3e-180 X-RAY
 2019-07-24 MET A:171 A:172 3.0 0.016 H -49.3 -51.7 3.0 0.016 0.0 HOH
 5.485
 N
 O
6pno 1 P78417 100.0 3e-180 X-RAY
 2019-07-24 MET A:171 A:172 0.0 0.0 H -54.6 -44.3 0.0 0.0 0.0 HOH
 4.219
 CG
 O
3vln 1 P78417 99.59 5e-180 X-RAY
 2012-05-16 MET A:172 A:172 2.0 0.011 H -52.2 -48.3 2.0 0.011 0.0 SO4
EDO
HOH
 3.717
6.621
5.340
 CG
CE
N
 O2
O1
O
4is0 1 P78417 99.59 5e-180 X-RAY
 2013-04-24 MET A:172 A:172 3.0 0.016 H -52.1 -47.3 3.0 0.016 0.0 1R4
1R4
HOH
 2.371
9.552
4.609
 HG2
HG2
H
 O23
O27
O
3lfl 1 P78417 99.59 1e-178 X-RAY
 2010-11-24 MET A:171 A:171 4.0 0.022 H -48.9 -50.9 4.0 0.022 0.0 HOH
 4.497
 CG
 O
MET B:171 B:171 4.0 0.022 H -47.4 -52.2 NA NA NA
MET C:171 C:171 6.0 0.032 H -60.7 -48.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p78417-f1 1 P78417 100.0 0.0 MET A:172 A:172 3.0 0.016 H -51.4 -49.5