Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 1088607 . G A CCDS7056.1:NM_004508.2:c.502Cgg>Tgg_NP_004499.2:p.168R>W Homo sapiens isopentenyl-diphosphate delta isomerase 1 (IDI1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2icj 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 ARG A:117 A:112 13.0 0.058 H -77.1 -26.7 13.0 0.058 0.0 SO4
HOH
 4.563
2.843
 NH2
NH1
 O2
O
2ick 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 ARG A:117 A:112 12.0 0.053 H -75.3 -29.6 12.0 0.053 0.0 DMA
HOH
 4.157
2.689
 NH2
NH1
 O2B
O
2dho 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 ARG A:119 A:111 23.0 0.102 H -77.6 -29.4 23.0 0.102 0.0 MN
HOH
 3.230
3.176
 O
NH1
 MN
O
2i6k 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 ARG A:119 A:111 12.0 0.053 H -72.8 -31.1 12.0 0.053 0.0 MG
EA2
HOH
 4.074
2.869
2.896
 NH2
NH2
NH1
 MG
O2P
O
ARG B:119 B:111 12.0 0.053 H -70.8 -31.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13907-f1 1 Q13907 100.0 1e-170 ARG A:111 A:111 8.0 0.036 H -78.9 -33.7