Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 1088647 . C A CCDS7056.1:NM_004508.2:c.462gaG>gaT_NP_004499.2:p.154E>D Homo sapiens isopentenyl-diphosphate delta isomerase 1 (IDI1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2icj 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 GLU A:103 A:98 74.0 0.389 -49.0 119.0 74.0 0.389 0.0 HOH
 2.599
 OE2
 O
2ick 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 GLU A:103 A:98 74.0 0.389 -50.5 114.8 74.0 0.389 0.0 HOH
 2.637
 OE1
 O
2dho 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 GLU A:105 A:97 75.0 0.395 -57.0 121.7 75.0 0.395 0.0 MN
HOH
 2.306
2.591
 OE2
OE1
 MN
O
2i6k 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 GLU A:105 A:97 73.0 0.384 -56.1 120.7 73.0 0.384 0.0 MG
ACY
HOH
 2.076
8.632
2.658
 OE2
O
OE1
 MG
OXT
O
GLU B:105 B:97 73.0 0.384 -59.1 123.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13907-f1 1 Q13907 100.0 1e-170 GLU A:97 A:97 88.0 0.463 -71.3 109.9