Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 1089319 . C A CCDS7056.1:NM_004508.2:c.328Gct>Tct_NP_004499.2:p.110A>S Homo sapiens isopentenyl-diphosphate delta isomerase 1 (IDI1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2icj 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 ALA A:59 A:54 0.0 0.0 E -147.5 -179.5 0.0 0.0 0.0 MG
SO4
HOH
 4.816
8.125
3.794
 CB
CB
CB
 MG
O1
O
2ick 1 Q86U81 100.0 4e-171 X-RAY
 2007-03-20 ALA A:59 A:54 0.0 0.0 E -146.9 178.1 0.0 0.0 0.0 MN
DMA
HOH
 4.787
3.092
4.810
 CB
CB
N
 MN
C5
O
2dho 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 ALA A:61 A:53 0.0 0.0 E -148.0 174.3 0.0 0.0 0.0 MN
MN
CL
HOH
 4.936
4.428
9.925
3.565
 CB
CB
CB
CB
 MN
MN
CL
O
2i6k 1 Q13907 98.27 2e-169 X-RAY
 2007-06-05 ALA A:61 A:53 0.0 0.0 E -150.3 166.9 0.0 0.0 0.0 MN
MG
EA2
HOH
 4.883
9.541
4.425
4.148
 CB
CB
CB
CB
 MN
MG
N3
O
ALA B:61 B:53 0.0 0.0 E -146.7 166.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q13907-f1 1 Q13907 100.0 1e-170 ALA A:53 A:53 1.0 0.009 E -134.6 174.7