Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 126086629 | . | C | A | CCDS7639.1:NM_000274.3:c.1202gGa>gTa_NP_000265.1:p.401G>V | Homo sapiens ornithine aminotransferase (OAT), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-04-01 | GLY | A:401 | A:401 | 17.0 | 0.227 | T | 91.9 | 17.9 | 17.0 | 0.227 | 0.0 |
HOH |
9.227 |
CA |
O |
||
GLY | B:401 | B:401 | 14.0 | 0.187 | T | 93.3 | 15.2 | 14.0 | 0.187 | 0.0 |
HOH |
3.930 |
CA |
O |
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GLY | C:401 | C:401 | 16.0 | 0.213 | T | 93.5 | 16.4 | NA | NA | NA | |||||||||||||
2oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-12-09 | GLY | A:401 | A:401 | 15.0 | 0.2 | T | 87.2 | 17.4 | NA | NA | NA | ||||||
GLY | B:401 | B:401 | 16.0 | 0.213 | T | 92.9 | 18.0 | NA | NA | NA | |||||||||||||
GLY | C:401 | C:401 | 16.0 | 0.213 | T | 81.8 | 23.0 | 16.0 | 0.213 | 0.0 |
HOH |
4.105 |
N |
O |
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2byj | 1 | P04181 | 99.77 | 0.0 |
X-RAY |
2005-09-07 | GLY | A:401 | A:401 | 15.0 | 0.2 | T | 97.1 | 28.0 | 15.0 | 0.2 | 0.0 | ||||||
GLY | B:401 | B:401 | 15.0 | 0.2 | T | 97.1 | 27.8 | 15.0 | 0.2 | 0.0 | |||||||||||||
GLY | C:401 | C:401 | 14.0 | 0.187 | T | 97.0 | 28.1 | NA | NA | NA | |||||||||||||
2byl | 1 | P04181 | 99.32 | 0.0 |
X-RAY |
2005-09-07 | GLY | A:401 | A:401 | 17.0 | 0.227 | T | 88.0 | 28.1 | 17.0 | 0.227 | 0.0 |
HOH |
6.859 |
C |
O |
||
GLY | B:401 | B:401 | 17.0 | 0.227 | T | 90.4 | 20.5 | 17.0 | 0.227 | 0.0 |
HOH |
3.845 |
CA |
O |
|||||||||
GLY | C:401 | C:401 | 16.0 | 0.213 | T | 88.2 | 24.7 | NA | NA | NA | |||||||||||||
6hx7 | 1 | P04181 | 99.76 | 0.0 |
X-RAY |
2019-06-05 | GLY | A:377 | A:401 | 15.0 | 0.2 | T | 95.9 | 27.0 | 15.0 | 0.2 | 0.0 |
HOH |
3.584 |
CA |
O |
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GLY | B:377 | B:401 | 13.0 | 0.173 | T | 95.5 | 25.1 | NA | NA | NA | |||||||||||||
GLY | C:377 | C:401 | 16.0 | 0.213 | T | 95.6 | 25.9 | NA | NA | NA | |||||||||||||
5vwo | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2017-08-30 | GLY | A:366 | A:401 | 15.0 | 0.2 | T | 98.4 | 20.7 | 15.0 | 0.2 | 0.0 |
HOH |
6.838 |
CA |
O |
||
GLY | B:366 | B:401 | 17.0 | 0.227 | T | 91.3 | 25.2 | 17.0 | 0.227 | 0.0 |
HOH |
3.694 |
O |
O |
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GLY | C:366 | C:401 | 15.0 | 0.2 | T | 86.9 | 24.6 | 15.0 | 0.2 | 0.0 |
HOH |
3.927 |
CA |
O |
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6oia | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLY | A:366 | A:401 | 18.0 | 0.24 | T | 87.9 | 26.4 | 18.0 | 0.24 | 0.0 |
HOH |
3.543 |
CA |
O |
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GLY | B:366 | B:401 | 16.0 | 0.213 | T | 94.2 | 24.9 | 16.0 | 0.213 | 0.0 |
HOH |
3.048 |
O |
O |
|||||||||
GLY | C:366 | C:401 | 15.0 | 0.2 | T | 94.4 | 19.4 | NA | NA | NA | |||||||||||||
6v8c | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | GLY | A:366 | A:401 | 15.0 | 0.2 | T | 97.1 | 20.3 | 15.0 | 0.2 | 0.0 |
HOH |
3.761 |
CA |
O |
||
GLY | B:366 | B:401 | 14.0 | 0.187 | T | 96.5 | 19.6 | NA | NA | NA | |||||||||||||
GLY | C:366 | C:401 | 15.0 | 0.2 | T | 97.2 | 19.6 | NA | NA | NA | |||||||||||||
6v8d | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | GLY | A:366 | A:401 | 15.0 | 0.2 | T | 95.1 | 23.7 | 15.0 | 0.2 | 0.0 |
HOH |
3.659 |
O |
O |
||
GLY | B:366 | B:401 | 14.0 | 0.187 | T | 89.5 | 28.4 | 14.0 | 0.187 | 0.0 |
HOH |
6.547 |
CA |
O |
|||||||||
GLY | C:366 | C:401 | 13.0 | 0.173 | T | 91.7 | 25.5 | NA | NA | NA | |||||||||||||
7jx9 | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-01-06 | GLY | A:366 | A:401 | 17.0 | 0.227 | T | 93.5 | 20.5 | 17.0 | 0.227 | 0.0 |
HOH |
4.478 |
CA |
O |
||
GLY | B:366 | B:401 | 16.0 | 0.213 | T | 92.6 | 23.4 | NA | NA | NA | |||||||||||||
GLY | C:366 | C:401 | 15.0 | 0.2 | T | 96.2 | 22.6 | NA | NA | NA | |||||||||||||
7lnm | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:366 | B:401 | 16.0 | 0.213 | T | 91.2 | 23.2 | 16.0 | 0.213 | 0.0 |
HOH |
3.733 |
CA |
O |
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GLY | B:366 | C:401 | 16.0 | 0.213 | T | 92.2 | 23.7 | 16.0 | 0.213 | 0.0 |
HOH |
3.893 |
CA |
O |
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GLY | C:366 | E:401 | 16.0 | 0.213 | T | 94.3 | 22.7 | NA | NA | NA | |||||||||||||
GLY | D:366 | F:401 | 16.0 | 0.213 | T | 87.6 | 29.5 | NA | NA | NA | |||||||||||||
GLY | E:366 | I:401 | 14.0 | 0.187 | T | 95.9 | 22.7 | NA | NA | NA | |||||||||||||
GLY | F:366 | J:401 | 14.0 | 0.187 | T | 96.1 | 22.4 | NA | NA | NA | |||||||||||||
7lom | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:366 | A:401 | 14.0 | 0.187 | T | 94.8 | 26.7 | 14.0 | 0.187 | 0.0 |
HOH |
3.424 |
O |
O |
||
GLY | B:366 | B:401 | 13.0 | 0.173 | T | 94.3 | 27.2 | NA | NA | NA | |||||||||||||
GLY | C:366 | C:401 | 14.0 | 0.187 | T | 89.8 | 24.0 | NA | NA | NA | |||||||||||||
7lon | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:366 | B:401 | 15.0 | 0.2 | T | 93.5 | 26.0 | 15.0 | 0.2 | 0.0 |
HOH |
5.949 |
N |
O |
||
GLY | B:366 | A:401 | 13.0 | 0.173 | T | 95.0 | 27.1 | NA | NA | NA | |||||||||||||
GLY | C:366 | C:401 | 16.0 | 0.213 | T | 93.0 | 27.1 | NA | NA | NA | |||||||||||||
1gbn | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | GLY | A:364 | A:401 | 16.0 | 0.213 | T | 88.6 | 20.0 | 16.0 | 0.213 | 0.0 |
HOH |
3.971 |
CA |
O |
||
GLY | B:364 | B:401 | 17.0 | 0.227 | T | 89.2 | 19.7 | 17.0 | 0.227 | 0.0 |
HOH |
6.849 |
C |
O |
|||||||||
GLY | C:364 | C:401 | 16.0 | 0.213 | T | 88.7 | 19.5 | 16.0 | 0.213 | 0.0 |
HOH |
6.998 |
C |
O |
|||||||||
2can | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | GLY | A:364 | A:401 | 16.0 | 0.213 | T | 98.7 | 21.8 | 16.0 | 0.213 | 0.0 |
HOH |
3.558 |
H |
O |
||
GLY | B:364 | B:401 | 17.0 | 0.227 | T | 98.1 | 21.3 | 17.0 | 0.227 | 0.0 |
HOH |
6.167 |
H |
O |
|||||||||
GLY | C:364 | C:401 | 17.0 | 0.227 | T | 97.4 | 21.9 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04181-f1 | 1 | P04181 | 100.0 | 0.0 | GLY | A:401 | A:401 | 15.0 | 0.2 | T | 90.1 | 23.5 |