Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 126092389 | . | C | A | CCDS7639.1:NM_000274.3:c.749cGa>cTa_NP_000265.1:p.250R>L | Homo sapiens ornithine aminotransferase (OAT), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-04-01 | ARG | A:250 | A:250 | 39.0 | 0.173 | H | -60.7 | -52.7 | 39.0 | 0.173 | 0.0 |
HOH |
3.626 |
NH1 |
O |
||
ARG | B:250 | B:250 | 40.0 | 0.178 | H | -61.1 | -47.2 | 40.0 | 0.178 | 0.0 |
HOH |
3.680 |
CG |
O |
|||||||||
ARG | C:250 | C:250 | 38.0 | 0.169 | H | -58.0 | -48.8 | NA | NA | NA | |||||||||||||
2oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-12-09 | ARG | A:250 | A:250 | 39.0 | 0.173 | H | -58.4 | -49.2 | NA | NA | NA | ||||||
ARG | B:250 | B:250 | 38.0 | 0.169 | H | -58.5 | -45.1 | NA | NA | NA | |||||||||||||
ARG | C:250 | C:250 | 39.0 | 0.173 | H | -58.8 | -48.3 | 39.0 | 0.173 | 0.0 |
HOH |
2.642 |
CD |
O |
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2byj | 1 | P04181 | 99.77 | 0.0 |
X-RAY |
2005-09-07 | ARG | A:250 | A:250 | 39.0 | 0.173 | H | -57.5 | -48.1 | 39.0 | 0.173 | 0.0 |
HOH |
7.349 |
NH1 |
O |
||
ARG | B:250 | B:250 | 39.0 | 0.173 | H | -58.4 | -47.5 | 39.0 | 0.173 | 0.0 |
HOH |
7.198 |
NH1 |
O |
|||||||||
ARG | C:250 | C:250 | 39.0 | 0.173 | H | -57.3 | -48.4 | NA | NA | NA | |||||||||||||
2byl | 1 | P04181 | 99.32 | 0.0 |
X-RAY |
2005-09-07 | ARG | A:250 | A:250 | 41.0 | 0.182 | H | -56.9 | -48.3 | 41.0 | 0.182 | 0.0 |
HOH |
3.518 |
CG |
O |
||
ARG | B:250 | B:250 | 38.0 | 0.169 | H | -58.6 | -48.2 | 38.0 | 0.169 | 0.0 |
HOH |
3.336 |
NH2 |
O |
|||||||||
ARG | C:250 | C:250 | 42.0 | 0.187 | H | -55.8 | -49.2 | NA | NA | NA | |||||||||||||
6hx7 | 1 | P04181 | 99.76 | 0.0 |
X-RAY |
2019-06-05 | ARG | A:226 | A:250 | 40.0 | 0.178 | H | -57.8 | -45.9 | 40.0 | 0.178 | 0.0 |
HOH |
3.316 |
NH1 |
O |
||
ARG | B:226 | B:250 | 37.0 | 0.164 | H | -57.1 | -46.5 | NA | NA | NA | |||||||||||||
ARG | C:226 | C:250 | 39.0 | 0.173 | H | -58.2 | -47.9 | NA | NA | NA | |||||||||||||
5vwo | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2017-08-30 | ARG | A:215 | A:250 | 37.0 | 0.164 | H | -56.8 | -43.3 | 37.0 | 0.164 | 0.0 |
HOH |
3.417 |
NH2 |
O |
||
ARG | B:215 | B:250 | 37.0 | 0.164 | H | -61.4 | -40.1 | 37.0 | 0.164 | 0.0 |
HOH |
3.288 |
NH2 |
O |
|||||||||
ARG | C:215 | C:250 | 40.0 | 0.178 | H | -57.4 | -44.1 | 40.0 | 0.178 | 0.0 |
HOH |
3.217 |
NH2 |
O |
|||||||||
6oia | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:215 | A:250 | 39.0 | 0.173 | H | -60.1 | -45.1 | 39.0 | 0.173 | 0.0 |
HOH |
3.375 |
NH2 |
O |
||
ARG | B:215 | B:250 | 38.0 | 0.169 | H | -61.9 | -41.3 | 38.0 | 0.169 | 0.0 |
HOH |
3.160 |
NH2 |
O |
|||||||||
ARG | C:215 | C:250 | 38.0 | 0.169 | H | -57.2 | -46.2 | NA | NA | NA | |||||||||||||
6v8c | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | ARG | A:215 | A:250 | 40.0 | 0.178 | H | -58.1 | -48.4 | 40.0 | 0.178 | 0.0 |
HOH |
3.224 |
NH2 |
O |
||
ARG | B:215 | B:250 | 39.0 | 0.173 | H | -58.4 | -45.0 | NA | NA | NA | |||||||||||||
ARG | C:215 | C:250 | 36.0 | 0.16 | H | -58.3 | -49.3 | NA | NA | NA | |||||||||||||
6v8d | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | ARG | A:215 | A:250 | 39.0 | 0.173 | H | -59.7 | -44.6 | 39.0 | 0.173 | 0.0 |
HOH |
3.362 |
NH2 |
O |
||
ARG | B:215 | B:250 | 39.0 | 0.173 | H | -59.4 | -44.4 | 39.0 | 0.173 | 0.0 |
HOH |
3.528 |
CG |
O |
|||||||||
ARG | C:215 | C:250 | 37.0 | 0.164 | H | -61.4 | -43.6 | NA | NA | NA | |||||||||||||
7jx9 | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-01-06 | ARG | A:215 | A:250 | 38.0 | 0.169 | H | -60.9 | -40.3 | 38.0 | 0.169 | 0.0 |
HOH |
3.299 |
NH1 |
O |
||
ARG | B:215 | B:250 | 40.0 | 0.178 | H | -58.3 | -42.6 | NA | NA | NA | |||||||||||||
ARG | C:215 | C:250 | 40.0 | 0.178 | H | -59.2 | -43.3 | NA | NA | NA | |||||||||||||
7lnm | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | ARG | A:215 | B:250 | 38.0 | 0.169 | H | -57.8 | -44.8 | 38.0 | 0.169 | 0.0 |
HOH |
3.235 |
NH2 |
O |
||
ARG | B:215 | C:250 | 39.0 | 0.173 | H | -60.4 | -47.0 | 39.0 | 0.173 | 0.0 |
HOH |
3.330 |
NH2 |
O |
|||||||||
ARG | C:215 | E:250 | 37.0 | 0.164 | H | -58.3 | -44.6 | NA | NA | NA | |||||||||||||
ARG | D:215 | F:250 | 40.0 | 0.178 | H | -59.4 | -46.2 | NA | NA | NA | |||||||||||||
ARG | E:215 | I:250 | 40.0 | 0.178 | H | -56.4 | -48.3 | NA | NA | NA | |||||||||||||
ARG | F:215 | J:250 | 36.0 | 0.16 | H | -57.2 | -47.2 | NA | NA | NA | |||||||||||||
7lom | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | ARG | A:215 | A:250 | 40.0 | 0.178 | H | -61.6 | -45.7 | 40.0 | 0.178 | 0.0 |
HOH |
3.179 |
NH1 |
O |
||
ARG | B:215 | B:250 | 41.0 | 0.182 | H | -59.3 | -44.8 | NA | NA | NA | |||||||||||||
ARG | C:215 | C:250 | 38.0 | 0.169 | H | -61.8 | -44.3 | NA | NA | NA | |||||||||||||
7lon | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | ARG | A:215 | B:250 | 38.0 | 0.169 | H | -57.0 | -49.6 | 38.0 | 0.169 | 0.0 |
HOH |
3.323 |
CG |
O |
||
ARG | B:215 | A:250 | 38.0 | 0.169 | H | -60.0 | -49.1 | NA | NA | NA | |||||||||||||
ARG | C:215 | C:250 | 36.0 | 0.16 | H | -59.5 | -48.2 | NA | NA | NA | |||||||||||||
1gbn | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | ARG | A:213 | A:250 | 39.0 | 0.173 | H | -62.8 | -45.8 | 39.0 | 0.173 | 0.0 |
HOH |
3.665 |
HH12 |
O |
||
ARG | B:213 | B:250 | 42.0 | 0.187 | H | -63.8 | -45.0 | 42.0 | 0.187 | 0.0 |
HOH |
3.000 |
CD |
O |
|||||||||
ARG | C:213 | C:250 | 40.0 | 0.178 | H | -62.7 | -45.4 | 40.0 | 0.178 | 0.0 |
HOH |
2.950 |
HH12 |
O |
|||||||||
2can | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | ARG | A:213 | A:250 | 38.0 | 0.169 | H | -62.0 | -45.5 | 38.0 | 0.169 | 0.0 |
HOH |
3.494 |
CG |
O |
||
ARG | B:213 | B:250 | 39.0 | 0.173 | H | -62.9 | -45.6 | 39.0 | 0.173 | 0.0 |
HOH |
3.244 |
HH12 |
O |
|||||||||
ARG | C:213 | C:250 | 39.0 | 0.173 | H | -62.0 | -45.6 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p04181-f1 | 1 | P04181 | 100.0 | 0.0 | ARG | A:250 | A:250 | 52.0 | 0.231 | H | -59.3 | -44.6 |