Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 126092428 | . | C | A | CCDS7639.1:NM_000274.3:c.710gGc>gTc_NP_000265.1:p.237G>V | Homo sapiens ornithine aminotransferase (OAT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-04-01 | GLY | A:237 | A:237 | 0.0 | 0.0 | T | 122.7 | 39.4 | 0.0 | 0.0 | 0.0 |
HOH |
5.726 |
N |
O |
||
| GLY | B:237 | B:237 | 0.0 | 0.0 | T | 120.6 | 42.3 | 0.0 | 0.0 | 0.0 |
HOH |
5.365 |
O |
O |
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| GLY | C:237 | C:237 | 0.0 | 0.0 | T | 126.5 | 37.8 | NA | NA | NA | |||||||||||||
| 2oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-12-09 | GLY | A:237 | A:237 | 1.0 | 0.013 | T | 119.7 | 43.8 | NA | NA | NA | ||||||
| GLY | B:237 | B:237 | 0.0 | 0.0 | T | 119.6 | 33.5 | NA | NA | NA | |||||||||||||
| GLY | C:237 | C:237 | 1.0 | 0.013 | T | 116.9 | 37.1 | 1.0 | 0.013 | 0.0 |
PFM PFM HOH |
9.309 9.309 4.044 |
N N CA |
O3 O3 O |
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| 2byj | 1 | P04181 | 99.77 | 0.0 |
X-RAY |
2005-09-07 | GLY | A:237 | A:237 | 1.0 | 0.013 | T | 116.1 | 40.1 | 1.0 | 0.013 | 0.0 |
PLP HOH |
9.949 9.290 |
N N |
O3 O |
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| GLY | B:237 | B:237 | 1.0 | 0.013 | T | 114.9 | 41.1 | 1.0 | 0.013 | 0.0 |
PLP HOH |
9.925 5.509 |
N N |
O3 O |
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| GLY | C:237 | C:237 | 1.0 | 0.013 | T | 115.9 | 39.3 | NA | NA | NA | |||||||||||||
| 2byl | 1 | P04181 | 99.32 | 0.0 |
X-RAY |
2005-09-07 | GLY | A:237 | A:237 | 1.0 | 0.013 | T | 114.9 | 39.0 | 1.0 | 0.013 | 0.0 |
HOH |
5.578 |
N |
O |
||
| GLY | B:237 | B:237 | 0.0 | 0.0 | T | 110.8 | 36.6 | 0.0 | 0.0 | 0.0 |
HOH |
5.444 |
N |
O |
|||||||||
| GLY | C:237 | C:237 | 0.0 | 0.0 | T | 109.7 | 37.0 | NA | NA | NA | |||||||||||||
| 6hx7 | 1 | P04181 | 99.76 | 0.0 |
X-RAY |
2019-06-05 | GLY | A:213 | A:237 | 0.0 | 0.0 | T | 117.4 | 36.0 | 0.0 | 0.0 | 0.0 |
PLP HOH |
9.728 4.317 |
N CA |
O3 O |
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| GLY | B:213 | B:237 | 0.0 | 0.0 | T | 118.7 | 36.6 | NA | NA | NA | |||||||||||||
| GLY | C:213 | C:237 | 0.0 | 0.0 | T | 118.0 | 35.8 | NA | NA | NA | |||||||||||||
| 5vwo | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2017-08-30 | GLY | A:202 | A:237 | 2.0 | 0.027 | T | 117.9 | 38.3 | 2.0 | 0.027 | 0.0 |
9QJ HOH |
9.884 5.170 |
N N |
O3 O |
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| GLY | B:202 | B:237 | 1.0 | 0.013 | T | 120.8 | 38.1 | 1.0 | 0.013 | 0.0 |
9QJ HOH |
9.676 4.953 |
N N |
O3 O |
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| GLY | C:202 | C:237 | 1.0 | 0.013 | T | 120.9 | 38.1 | 1.0 | 0.013 | 0.0 |
9QJ HOH |
9.894 3.949 |
N CA |
O3 O |
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| 6oia | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLY | A:202 | A:237 | 1.0 | 0.013 | T | 122.5 | 33.5 | 1.0 | 0.013 | 0.0 |
HOH |
5.545 |
N |
O |
||
| GLY | B:202 | B:237 | 0.0 | 0.0 | T | 107.2 | 33.5 | 0.0 | 0.0 | 0.0 |
MQ4 HOH |
7.051 4.535 |
N CA |
F1 O |
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| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 119.6 | 32.6 | NA | NA | NA | |||||||||||||
| 6v8c | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | GLY | A:202 | A:237 | 0.0 | 0.0 | T | 124.9 | 36.5 | 0.0 | 0.0 | 0.0 |
PLP HOH |
9.627 5.299 |
N N |
O3 O |
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| GLY | B:202 | B:237 | 0.0 | 0.0 | T | 122.0 | 37.1 | NA | NA | NA | |||||||||||||
| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 124.3 | 37.4 | NA | NA | NA | |||||||||||||
| 6v8d | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | GLY | A:202 | A:237 | 1.0 | 0.013 | T | 117.5 | 34.3 | 1.0 | 0.013 | 0.0 |
PLP HOH |
9.715 5.310 |
N N |
O3 O |
||
| GLY | B:202 | B:237 | 1.0 | 0.013 | T | 116.9 | 39.6 | 1.0 | 0.013 | 0.0 |
PLP HOH |
9.948 5.429 |
N N |
O3 O |
|||||||||
| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 115.2 | 36.5 | NA | NA | NA | |||||||||||||
| 7jx9 | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-01-06 | GLY | A:202 | A:237 | 0.0 | 0.0 | T | 115.9 | 38.1 | 0.0 | 0.0 | 0.0 |
IF1 HOH |
6.813 5.486 |
N N |
F30 O |
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| GLY | B:202 | B:237 | 0.0 | 0.0 | T | 118.0 | 43.4 | NA | NA | NA | |||||||||||||
| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 105.6 | 35.9 | NA | NA | NA | |||||||||||||
| 7lnm | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:202 | B:237 | 1.0 | 0.013 | T | 109.4 | 36.3 | 1.0 | 0.013 | 0.0 |
Y7S HOH |
9.586 3.900 |
N CA |
O15 O |
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| GLY | B:202 | C:237 | 3.0 | 0.04 | T | 112.4 | 38.2 | 3.0 | 0.04 | 0.0 |
Y7S HOH |
9.407 5.670 |
N N |
O20 O |
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| GLY | C:202 | E:237 | 1.0 | 0.013 | T | 109.4 | 36.6 | NA | NA | NA | |||||||||||||
| GLY | D:202 | F:237 | 0.0 | 0.0 | T | 120.2 | 37.1 | NA | NA | NA | |||||||||||||
| GLY | E:202 | I:237 | 0.0 | 0.0 | T | 121.1 | 33.1 | NA | NA | NA | |||||||||||||
| GLY | F:202 | J:237 | 0.0 | 0.0 | T | 122.3 | 33.5 | NA | NA | NA | |||||||||||||
| 7lom | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:202 | A:237 | 1.0 | 0.013 | T | 119.4 | 31.7 | 1.0 | 0.013 | 0.0 |
Y8P HOH |
6.780 5.316 |
N N |
O05 O |
||
| GLY | B:202 | B:237 | 1.0 | 0.013 | T | 113.4 | 36.2 | NA | NA | NA | |||||||||||||
| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 110.9 | 35.4 | NA | NA | NA | |||||||||||||
| 7lon | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | GLY | A:202 | B:237 | 1.0 | 0.013 | T | 117.3 | 37.2 | 1.0 | 0.013 | 0.0 |
7QP HOH |
9.464 4.213 |
N CA |
O19 O |
||
| GLY | B:202 | A:237 | 0.0 | 0.0 | T | 116.5 | 36.5 | NA | NA | NA | |||||||||||||
| GLY | C:202 | C:237 | 0.0 | 0.0 | T | 118.1 | 37.3 | NA | NA | NA | |||||||||||||
| 1gbn | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | GLY | A:200 | A:237 | 0.0 | 0.0 | T | 120.4 | 38.3 | 0.0 | 0.0 | 0.0 |
GAB PLP HOH |
8.952 8.490 4.563 |
H H H |
C4 O3 O |
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| GLY | B:200 | B:237 | 0.0 | 0.0 | T | 120.5 | 39.0 | 0.0 | 0.0 | 0.0 |
GBC PLP HOH |
8.917 8.625 4.749 |
H H H |
C4 O3 O |
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| GLY | C:200 | C:237 | 0.0 | 0.0 | T | 120.8 | 38.7 | 0.0 | 0.0 | 0.0 |
GBC PLP HOH |
8.841 8.665 4.770 |
H H H |
C4 O3 O |
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| 2can | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | GLY | A:200 | A:237 | 0.0 | 0.0 | H | 128.7 | 33.6 | 0.0 | 0.0 | 0.0 |
CAN PLP HOH |
9.735 8.602 4.696 |
H H H |
NZ O3 O |
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| GLY | B:200 | B:237 | 0.0 | 0.0 | H | 128.6 | 34.8 | 0.0 | 0.0 | 0.0 |
CAN PLP HOH |
9.737 8.611 4.673 |
H H H |
OG O3 O |
|||||||||
| GLY | C:200 | C:237 | 0.0 | 0.0 | H | 129.2 | 34.0 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04181-f1 | 1 | P04181 | 100.0 | 0.0 | GLY | A:237 | A:237 | 0.0 | 0.0 | T | 99.6 | 39.2 | |