Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 126097206 . C A CCDS7639.1:NM_000274.3:c.425gGa>gTa_NP_000265.1:p.142G>V Homo sapiens ornithine aminotransferase (OAT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1oat 1 P04181 100.0 0.0 X-RAY
 1998-04-01 GLY A:142 A:142 22.0 0.293 H -64.3 -49.5 22.0 0.293 0.0 PLP
HOH
 2.668
3.507
 N
N
 O1P
O
GLY B:142 B:142 23.0 0.307 H -58.4 -47.1 23.0 0.307 0.0 PLP
HOH
 2.609
3.360
 N
N
 O1P
O
GLY C:142 C:142 21.0 0.28 H -64.2 -46.3 NA NA NA
2oat 1 P04181 100.0 0.0 X-RAY
 1998-12-09 GLY A:142 A:142 21.0 0.28 H -56.2 -46.0 NA NA NA
GLY B:142 B:142 20.0 0.267 H -52.8 -51.1 NA NA NA
GLY C:142 C:142 24.0 0.32 H -59.9 -43.3 24.0 0.32 0.0 PFM
PFM
HOH
 2.793
2.793
3.635
 N
N
N
 OP3
OP3
O
2byj 1 P04181 99.77 0.0 X-RAY
 2005-09-07 GLY A:142 A:142 21.0 0.28 H -64.8 -44.6 21.0 0.28 0.0 PLP
 3.067
 N
 O1P
GLY B:142 B:142 19.0 0.253 H -65.3 -45.0 19.0 0.253 0.0 PLP
HOH
 2.795
9.681
 N
CA
 O1P
O
GLY C:142 C:142 19.0 0.253 H -64.8 -44.4 NA NA NA
2byl 1 P04181 99.32 0.0 X-RAY
 2005-09-07 GLY A:142 A:142 20.0 0.267 H -59.2 -48.4 20.0 0.267 0.0 PLP
HOH
 2.893
3.422
 N
N
 O1P
O
GLY B:142 B:142 21.0 0.28 H -58.9 -45.7 21.0 0.28 0.0 PLP
HOH
 2.882
3.327
 N
N
 O1P
O
GLY C:142 C:142 21.0 0.28 H -63.1 -43.9 NA NA NA
6hx7 1 P04181 99.76 0.0 X-RAY
 2019-06-05 GLY A:118 A:142 19.0 0.253 H -63.2 -42.8 19.0 0.253 0.0 PLP
HOH
 2.893
3.372
 N
N
 O1P
O
GLY B:118 B:142 21.0 0.28 H -60.9 -44.1 NA NA NA
GLY C:118 C:142 19.0 0.253 H -61.7 -42.2 NA NA NA
5vwo 1 P04181 100.0 0.0 X-RAY
 2017-08-30 GLY A:107 A:142 16.0 0.213 H -60.6 -45.4 16.0 0.213 0.0 9QJ
HOH
 2.986
3.363
 N
N
 O3P
O
GLY B:107 B:142 16.0 0.213 H -60.9 -45.3 16.0 0.213 0.0 9QJ
HOH
 2.818
3.206
 N
N
 O1P
O
GLY C:107 C:142 17.0 0.227 H -61.4 -44.3 17.0 0.227 0.0 9QJ
HOH
 2.932
3.321
 N
N
 O3P
O
6oia 1 P04181 100.0 0.0 X-RAY
 2019-09-18 GLY A:107 A:142 21.0 0.28 H -60.4 -43.9 21.0 0.28 0.0 PLP
HOH
 2.941
3.369
 N
N
 O3P
O
GLY B:107 B:142 20.0 0.267 H -61.0 -41.2 20.0 0.267 0.0 PLP
MQ4
HOH
 2.828
7.127
2.829
 N
CA
O
 O1P
N10
O
GLY C:107 C:142 20.0 0.267 H -62.6 -40.9 NA NA NA
6v8c 1 P04181 100.0 0.0 X-RAY
 2020-12-16 GLY A:107 A:142 21.0 0.28 H -58.8 -45.3 19.0 0.253 0.027 A:P04181:0.027
 PLP
QRM
HOH
 2.785
7.154
3.173
 N
CA
N
 O1P
N10
O
GLY B:107 B:142 22.0 0.293 H -62.1 -42.0 NA NA NA
GLY C:107 C:142 22.0 0.293 H -58.6 -45.4 NA NA NA
6v8d 1 P04181 100.0 0.0 X-RAY
 2020-12-16 GLY A:107 A:142 17.0 0.227 H -64.3 -42.0 17.0 0.227 0.0 PLP
O78
HOH
 2.793
7.401
4.775
 N
CA
N
 O2P
C5
O
GLY B:107 B:142 19.0 0.253 H -60.0 -45.4 19.0 0.253 0.0 PLP
O78
HOH
 2.819
7.285
3.337
 N
CA
N
 O1P
C5
O
GLY C:107 C:142 19.0 0.253 H -61.7 -39.0 NA NA NA
7jx9 1 P04181 100.0 0.0 X-RAY
 2021-01-06 GLY A:107 A:142 21.0 0.28 H -61.7 -44.8 21.0 0.28 0.0 IF1
HOH
 2.869
3.334
 N
N
 O16
O
GLY B:107 B:142 22.0 0.293 H -57.9 -47.4 NA NA NA
GLY C:107 C:142 22.0 0.293 H -60.5 -41.5 NA NA NA
7lnm 1 P04181 100.0 0.0 X-RAY
 2021-08-25 GLY A:107 B:142 17.0 0.227 H -64.6 -39.6 17.0 0.227 0.0 Y7S
HOH
 3.031
3.314
 N
N
 O41
O
GLY B:107 C:142 23.0 0.307 H -63.2 -43.9 23.0 0.307 0.0 Y7S
HOH
 3.104
3.444
 N
N
 O43
O
GLY C:107 E:142 18.0 0.24 H -64.5 -40.4 NA NA NA
GLY D:107 F:142 21.0 0.28 H -60.0 -44.3 NA NA NA
GLY E:107 I:142 17.0 0.227 H -65.1 -40.5 NA NA NA
GLY F:107 J:142 17.0 0.227 H -63.9 -40.6 NA NA NA
7lom 1 P04181 100.0 0.0 X-RAY
 2021-08-25 GLY A:107 A:142 20.0 0.267 H -64.4 -39.7 20.0 0.267 0.0 THR
Y8P
HOH
 6.798
3.050
5.033
 N
N
N
 OG1
O42
O
GLY B:107 B:142 18.0 0.24 H -64.2 -39.9 NA NA NA
GLY C:107 C:142 21.0 0.28 H -64.4 -40.4 NA NA NA
7lon 1 P04181 100.0 0.0 X-RAY
 2021-08-25 GLY A:107 B:142 19.0 0.253 H -62.3 -39.0 19.0 0.253 0.0 THR
7QP
HOH
 7.054
2.790
3.329
 N
N
N
 OG1
O42
O
GLY B:107 A:142 20.0 0.267 H -60.8 -40.7 NA NA NA
GLY C:107 C:142 19.0 0.253 H -62.2 -40.0 NA NA NA
1gbn 1 P04181 100.0 0.0 X-RAY
 1998-06-03 GLY A:105 A:142 21.0 0.28 H -61.3 -45.7 21.0 0.28 0.0 GAB
PLP
HOH
 7.526
2.014
3.765
 H
H
H
 N3
O2P
O
GLY B:105 B:142 20.0 0.267 H -61.7 -45.7 20.0 0.267 0.0 GBC
PLP
HOH
 7.524
1.924
3.702
 H
H
H
 N3
O2P
O
GLY C:105 C:142 21.0 0.28 H -60.9 -45.3 21.0 0.28 0.0 GBC
PLP
HOH
 7.337
1.975
2.990
 H
H
H
 N3
O2P
O
2can 1 P04181 100.0 0.0 X-RAY
 1998-06-03 GLY A:105 A:142 21.0 0.28 H -64.4 -44.0 21.0 0.28 0.0 CAN
PLP
HOH
 7.593
2.171
3.798
 CA
H
H
 NZ
O2P
O
GLY B:105 B:142 20.0 0.267 H -64.9 -44.0 20.0 0.267 0.0 CAN
PLP
HOH
 7.167
2.030
3.560
 H
H
H
 NZ
O2P
O
GLY C:105 C:142 21.0 0.28 H -64.9 -44.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04181-f1 1 P04181 100.0 0.0 GLY A:142 A:142 21.0 0.28 H -58.0 -40.7