Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 126100572 | . | G | A | CCDS7639.1:NM_000274.3:c.169Cct>Tct_NP_000265.1:p.57P>S | Homo sapiens ornithine aminotransferase (OAT), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-04-01 | PRO | A:57 | A:57 | 78.0 | 0.538 | -69.1 | 162.3 | 8.0 | 0.055 | 0.483 |
B:P04181:0.483 |
HOH |
3.440 |
CG |
O |
||
| PRO | B:57 | B:57 | 77.0 | 0.531 | -71.1 | 166.3 | 9.0 | 0.062 | 0.469 |
A:P04181:0.469 |
HOH |
3.483 |
CG |
O |
|||||||||
| PRO | C:57 | C:57 | 76.0 | 0.524 | -67.6 | 164.6 | NA | NA | NA | ||||||||||||||
| 2oat | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-12-09 | PRO | A:57 | A:57 | 75.0 | 0.517 | -72.7 | 157.6 | NA | NA | NA | |||||||
| PRO | B:57 | B:57 | 72.0 | 0.497 | -70.5 | 163.6 | NA | NA | NA | ||||||||||||||
| PRO | C:57 | C:57 | 78.0 | 0.538 | -75.0 | 161.5 | 78.0 | 0.538 | 0.0 |
PFM PFM HOH |
9.272 9.272 2.557 |
CG CG O |
N N O |
||||||||||
| 2byj | 1 | P04181 | 99.77 | 0.0 |
X-RAY |
2005-09-07 | PRO | A:57 | A:57 | 77.0 | 0.531 | -77.9 | 162.9 | 5.0 | 0.034 | 0.497 |
B:P04181:0.497 |
HOH |
5.184 |
N |
O |
||
| PRO | B:57 | B:57 | 78.0 | 0.538 | -78.4 | 163.8 | 7.0 | 0.048 | 0.49 |
A:P04181:0.49 |
|||||||||||||
| PRO | C:57 | C:57 | 78.0 | 0.538 | -77.8 | 163.4 | NA | NA | NA | ||||||||||||||
| 2byl | 1 | P04181 | 99.32 | 0.0 |
X-RAY |
2005-09-07 | PRO | A:57 | A:57 | 86.0 | 0.593 | -82.7 | 152.0 | 23.0 | 0.159 | 0.434 |
B:P04181:0.434 |
HOH |
3.948 |
CG |
O |
||
| PRO | B:57 | B:57 | 88.0 | 0.607 | -79.8 | 152.4 | 20.0 | 0.138 | 0.469 |
A:P04181:0.469 |
HOH |
3.701 |
CB |
O |
|||||||||
| PRO | C:57 | C:57 | 86.0 | 0.593 | -83.9 | 152.8 | NA | NA | NA | ||||||||||||||
| 6hx7 | 1 | P04181 | 99.76 | 0.0 |
X-RAY |
2019-06-05 | PRO | A:33 | A:57 | 75.0 | 0.517 | -69.0 | 158.4 | 5.0 | 0.034 | 0.483 |
A:P04181:0.483 |
HOH |
2.541 |
O |
O |
||
| PRO | B:33 | B:57 | 77.0 | 0.531 | -68.3 | 159.4 | NA | NA | NA | ||||||||||||||
| PRO | C:33 | C:57 | 77.0 | 0.531 | -68.3 | 158.9 | NA | NA | NA | ||||||||||||||
| 5vwo | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2017-08-30 | PRO | A:22 | A:57 | 85.0 | 0.586 | -80.0 | 153.9 | 20.0 | 0.138 | 0.448 |
B:P04181:0.448 |
HOH |
2.649 |
O |
O |
||
| PRO | B:22 | B:57 | 86.0 | 0.593 | -77.6 | 154.4 | 21.0 | 0.145 | 0.448 |
A:P04181:0.448 |
HOH |
2.652 |
O |
O |
|||||||||
| PRO | C:22 | C:57 | 89.0 | 0.614 | -80.4 | 151.9 | 89.0 | 0.614 | 0.0 |
HOH |
2.640 |
O |
O |
||||||||||
| 6oia | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | PRO | A:22 | A:57 | 86.0 | 0.593 | -71.7 | 161.7 | 9.0 | 0.062 | 0.531 |
B:P04181:0.531 |
HOH |
3.484 |
CD |
O |
||
| PRO | B:22 | B:57 | 77.0 | 0.531 | -72.7 | 160.6 | 7.0 | 0.048 | 0.483 |
A:P04181:0.483 |
MQ4 HOH |
9.646 2.865 |
CG O |
O12 O |
|||||||||
| PRO | C:22 | C:57 | 84.0 | 0.579 | -75.2 | 157.7 | NA | NA | NA | ||||||||||||||
| 6v8c | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | PRO | A:22 | A:57 | 77.0 | 0.531 | -70.8 | 162.4 | 4.0 | 0.028 | 0.503 |
A:P04181:0.503 |
QRM HOH |
9.523 2.689 |
CG O |
O1 O |
||
| PRO | B:22 | B:57 | 76.0 | 0.524 | -74.0 | 159.6 | NA | NA | NA | ||||||||||||||
| PRO | C:22 | C:57 | 79.0 | 0.545 | -70.4 | 160.8 | NA | NA | NA | ||||||||||||||
| 6v8d | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2020-12-16 | PRO | A:22 | A:57 | 75.0 | 0.517 | -78.2 | 163.0 | 5.0 | 0.034 | 0.483 |
B:P04181:0.483 |
HOH |
3.560 |
CG |
O |
||
| PRO | B:22 | B:57 | 84.0 | 0.579 | -84.2 | 160.2 | 8.0 | 0.055 | 0.524 |
A:P04181:0.524 |
HOH |
3.063 |
O |
O |
|||||||||
| PRO | C:22 | C:57 | 80.0 | 0.552 | -74.4 | 161.4 | NA | NA | NA | ||||||||||||||
| 7jx9 | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-01-06 | PRO | A:22 | A:57 | 75.0 | 0.517 | -67.6 | 163.9 | 5.0 | 0.034 | 0.483 |
A:P04181:0.483 |
IF1 HOH |
9.740 2.842 |
CG O |
O27 O |
||
| PRO | B:22 | B:57 | 81.0 | 0.559 | -73.8 | 162.5 | NA | NA | NA | ||||||||||||||
| PRO | C:22 | C:57 | 76.0 | 0.524 | -67.8 | 159.2 | NA | NA | NA | ||||||||||||||
| 7lnm | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | PRO | A:22 | B:57 | 80.0 | 0.552 | -72.3 | 159.8 | 6.0 | 0.041 | 0.511 |
B:P04181:0.51 |
HOH |
2.653 |
O |
O |
||
| PRO | B:22 | C:57 | 84.0 | 0.579 | -72.6 | 164.0 | 7.0 | 0.048 | 0.531 |
A:P04181:0.531 |
HOH |
3.456 |
CG |
O |
|||||||||
| PRO | C:22 | E:57 | 83.0 | 0.572 | -69.4 | 159.3 | NA | NA | NA | ||||||||||||||
| PRO | D:22 | F:57 | 86.0 | 0.593 | -73.6 | 169.3 | NA | NA | NA | ||||||||||||||
| PRO | E:22 | I:57 | 84.0 | 0.579 | -75.2 | 159.6 | NA | NA | NA | ||||||||||||||
| PRO | F:22 | J:57 | 83.0 | 0.572 | -73.4 | 162.4 | NA | NA | NA | ||||||||||||||
| 7lom | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | PRO | A:22 | A:57 | 81.0 | 0.559 | -73.3 | 166.5 | 6.0 | 0.041 | 0.518 |
A:P04181:0.517 |
HOH |
3.184 |
CG |
O |
||
| PRO | B:22 | B:57 | 84.0 | 0.579 | -70.5 | 164.5 | NA | NA | NA | ||||||||||||||
| PRO | C:22 | C:57 | 76.0 | 0.524 | -74.7 | 160.6 | NA | NA | NA | ||||||||||||||
| 7lon | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
2021-08-25 | PRO | A:22 | B:57 | 82.0 | 0.566 | -68.3 | 161.7 | 5.0 | 0.034 | 0.532 |
A:P04181:0.531 |
7QP HOH |
9.626 2.825 |
CG O |
O04 O |
||
| PRO | B:22 | A:57 | 79.0 | 0.545 | -67.6 | 162.4 | NA | NA | NA | ||||||||||||||
| PRO | C:22 | C:57 | 82.0 | 0.566 | -67.6 | 162.2 | NA | NA | NA | ||||||||||||||
| 1gbn | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | PRO | A:20 | A:57 | 78.0 | 0.538 | -67.3 | 169.0 | 8.0 | 0.055 | 0.483 |
B:P04181:0.483 |
GAB HOH |
9.238 3.466 |
CG CG |
O2' O |
||
| PRO | B:20 | B:57 | 78.0 | 0.538 | -68.0 | 168.9 | 9.0 | 0.062 | 0.476 |
A:P04181:0.476 |
GBC HOH |
9.433 3.101 |
CG O |
O1 O |
|||||||||
| PRO | C:20 | C:57 | 80.0 | 0.552 | -67.4 | 169.1 | 80.0 | 0.552 | 0.0 |
GBC HOH |
9.331 3.645 |
CG CA |
O2 O |
||||||||||
| 2can | 1 | P04181 | 100.0 | 0.0 |
X-RAY |
1998-06-03 | PRO | A:20 | A:57 | 80.0 | 0.552 | -72.6 | 158.9 | 9.0 | 0.062 | 0.49 |
B:P04181:0.49 |
CAN HOH |
9.596 3.232 |
CG O |
N O |
||
| PRO | B:20 | B:57 | 80.0 | 0.552 | -73.5 | 158.6 | 11.0 | 0.076 | 0.476 |
A:P04181:0.476 |
HOH |
3.129 |
O |
O |
|||||||||
| PRO | C:20 | C:57 | 79.0 | 0.545 | -72.9 | 159.2 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04181-f1 | 1 | P04181 | 100.0 | 0.0 | PRO | A:57 | A:57 | 71.0 | 0.49 | -69.1 | 156.1 | ||