Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81107485 . C A CCDS7358.1:NM_005729.3:c.181Cgc>Agc_NP_005720.1:p.61R>S Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ARG A:19 X:19 89.0 0.396 E -120.4 135.7 89.0 0.396 0.0 HOH
 2.772
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ARG A:19 X:19 92.0 0.409 E -120.6 131.6 92.0 0.409 0.0 HOH
 2.725
 O
 O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ARG A:19 A:19 89.0 0.396 E -118.0 134.5 89.0 0.396 0.0 HOH
 2.714
 O
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ARG A:19 A:19 92.0 0.409 E -121.3 134.1 92.0 0.409 0.0 HOH
 2.732
 O
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 ARG A:19 A:19 112.0 0.498 E -109.5 134.6 112.0 0.498 0.0 HOH
 2.653
 O
 O
ARG B:19 B:19 105.0 0.467 E -114.0 134.9 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 90.0 0.4 E -116.5 135.5 90.0 0.4 0.0 HOH
 2.678
 O
 O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 88.0 0.391 E -117.6 134.1 88.0 0.391 0.0 HOH
 2.714
 O
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 89.0 0.396 E -119.0 138.2 89.0 0.396 0.0 HOH
 2.706
 O
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 89.0 0.396 E -118.7 135.0 89.0 0.396 0.0 HOH
 2.726
 O
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 87.0 0.387 E -121.1 134.7 87.0 0.387 0.0 HOH
 2.658
 O
 O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 88.0 0.391 E -120.3 135.5 88.0 0.391 0.0 HOH
 2.707
 O
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 87.0 0.387 E -121.8 135.0 87.0 0.387 0.0 HOH
 2.710
 O
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 90.0 0.4 E -121.5 135.2 90.0 0.4 0.0 CL
HOH
 2.064
2.028
 HH22
HH11
 CL
O
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 X:61 87.0 0.387 E -120.4 134.5 87.0 0.387 0.0 HOH
 2.724
 O
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 X:61 89.0 0.396 E -119.7 133.1 89.0 0.396 0.0 HOH
 2.720
 O
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 90.0 0.4 E -118.2 135.3 90.0 0.4 0.0 HOH
 2.701
 O
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 X:61 87.0 0.387 E -119.6 135.3 87.0 0.387 0.0 HOH
 2.723
 O
 O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 X:61 87.0 0.387 E -120.4 132.4 87.0 0.387 0.0 HOH
 2.712
 O
 O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 89.0 0.396 E -119.0 135.1 89.0 0.396 0.0 HOH
 2.718
 O
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:20 A:61 95.0 0.422 E -123.3 134.6 95.0 0.422 0.0 HOH
 2.681
 O
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 ARG A:19 A:19 105.0 0.467 E -113.3 135.6 105.0 0.467 0.0 HOH
 2.735
 O
 O
ARG B:19 B:19 97.0 0.431 E -118.4 132.6 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:19 A:19 88.0 0.391 E -116.0 136.4 88.0 0.391 0.0 K
HOH
 7.591
2.772
 NH2
O
 K
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:19 A:19 88.0 0.391 E -116.8 135.3 88.0 0.391 0.0 HOH
 2.750
 O
 O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:19 A:19 86.0 0.382 E -116.1 131.1 86.0 0.382 0.0 HOH
 2.678
 O
 O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:19 A:19 87.0 0.387 E -116.5 128.0 87.0 0.387 0.0 K
HOH
 7.541
2.656
 NH2
O
 K
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:19 A:19 87.0 0.387 E -114.6 133.6 87.0 0.387 0.0 FMT
HOH
 9.975
2.617
 NH2
O
 O1
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 ARG A:19 A:19 91.0 0.404 E -123.0 136.3 91.0 0.404 0.0 EDO
EDO
HOH
 3.194
4.999
2.797
 NH1
O
O
 O1
O2
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 ARG A:19 A:19 96.0 0.427 E -116.3 132.8 96.0 0.427 0.0 HOH
 2.678
 O
 O
ARG B:19 B:19 95.0 0.422 E -117.9 136.5 95.0 0.422 0.0 HOH
 2.437
 O
 O
ARG C:19 C:19 108.0 0.48 E -121.2 133.5 108.0 0.48 0.0 HOH
 2.695
 O
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 ARG A:18 A:61 101.0 0.449 E -113.2 137.4 101.0 0.449 0.0 HOH
 2.675
 O
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 A:61 90.0 0.4 E -120.0 134.9 90.0 0.4 0.0 HOH
 2.709
 O
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 A:61 91.0 0.404 E -126.1 133.2 91.0 0.404 0.0 HOH
 2.864
 O
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 X:61 91.0 0.404 E -119.4 133.9 91.0 0.404 0.0 DMS
HOH
 7.011
2.759
 O
O
 O
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 A:61 90.0 0.4 E -116.5 137.2 90.0 0.4 0.0 HOH
 2.833
 O
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 X:61 88.0 0.391 E -119.5 135.6 88.0 0.391 0.0 HOH
 2.047
 HH11
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 X:61 89.0 0.396 E -122.0 133.4 89.0 0.396 0.0 HOH
 2.761
 O
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:18 X:61 89.0 0.396 E -121.5 133.8 89.0 0.396 0.0 HOH
 2.017
 HH11
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:18 A:61 90.0 0.4 E -111.9 142.0 90.0 0.4 0.0 HOH
 2.736
 N
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:18 A:61 88.0 0.391 E -115.7 138.1 88.0 0.391 0.0 HOH
 2.728
 O
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:18 A:61 88.0 0.391 E -115.8 137.8 88.0 0.391 0.0 HOH
 2.700
 O
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ARG A:18 A:19 84.0 0.373 E -115.5 133.2 84.0 0.373 0.0 HOH
 2.740
 O
 O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ARG A:18 A:19 85.0 0.378 E -118.3 131.4 85.0 0.378 0.0 K
FMT
HOH
 7.388
9.910
2.659
 NH2
NH2
O
 K
O1
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 91.0 0.404 E -115.3 136.2 91.0 0.404 0.0 HOH
 2.777
 O
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 89.0 0.396 E -119.4 133.1 89.0 0.396 0.0 SO4
HOH
 6.217
2.781
 O
O
 O2
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 89.0 0.396 E -116.1 134.1 89.0 0.396 0.0 HOH
 2.820
 O
 O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 90.0 0.4 E -113.0 133.9 90.0 0.4 0.0 SO4
HOH
 6.228
2.657
 O
O
 O3
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 92.0 0.409 E -115.2 133.4 92.0 0.409 0.0 HOH
 2.704
 NH1
 O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 89.0 0.396 E -123.7 137.9 89.0 0.396 0.0 HOH
 2.818
 N
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:18 A:61 91.0 0.404 E -114.5 128.7 91.0 0.404 0.0 HOH
 2.728
 O
 O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 ARG A:19 X:19 100.0 0.444 E -120.1 133.0 100.0 0.444 0.0 HOH
 2.974
 NH1
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 ARG A:19 A:19 92.0 0.409 E -117.3 134.6 92.0 0.409 0.0 HOH
 2.673
 O
 O
ARG B:19 B:19 91.0 0.404 E -117.7 134.6 NA NA NA
ARG C:19 C:19 91.0 0.404 E -118.0 134.7 NA NA NA
ARG D:19 D:19 90.0 0.4 E -118.2 135.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 ARG A:61 A:61 108.0 0.48 E -105.4 139.7