Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81109463 . A C CCDS7358.1:NM_005729.3:c.269tAc>tCc_NP_005720.1:p.90Y>S Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 TYR A:48 X:48 0.0 0.0 S -76.6 -19.3 0.0 0.0 0.0 HOH
 3.269
 N
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 TYR A:48 X:48 0.0 0.0 S -80.3 -17.9 0.0 0.0 0.0 HOH
 3.208
 N
 O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 TYR A:48 A:48 0.0 0.0 S -77.5 -20.1 0.0 0.0 0.0 HOH
 3.241
 N
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 TYR A:48 A:48 0.0 0.0 S -78.9 -18.6 0.0 0.0 0.0 HOH
 3.135
 N
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 TYR A:48 A:48 0.0 0.0 S -74.3 -18.4 0.0 0.0 0.0 HOH
 3.202
 N
 O
TYR B:48 B:48 0.0 0.0 S -76.5 -20.1 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -76.9 -22.2 0.0 0.0 0.0 Q8A
HOH
 9.760
3.142
 OH
N
 NAA
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -80.3 -19.4 0.0 0.0 0.0 HOH
 3.251
 N
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -80.5 -18.2 0.0 0.0 0.0 HOH
 3.291
 N
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -78.7 -17.2 0.0 0.0 0.0 6AI
HOH
 9.354
3.281
 OH
N
 NAA
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -78.8 -21.9 0.0 0.0 0.0 N3M
HOH
 9.418
3.264
 OH
N
 NAB
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -78.4 -19.3 0.0 0.0 0.0 3AO
HOH
 9.274
3.274
 OH
N
 NAB
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -80.1 -19.4 0.0 0.0 0.0 HOH
 3.261
 N
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -77.8 -19.0 0.0 0.0 0.0 HOH
 2.839
 H
 H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 X:90 0.0 0.0 S -82.7 -17.4 0.0 0.0 0.0 M3I
HOH
 9.431
3.378
 OH
N
 NAB
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 X:90 0.0 0.0 S -80.9 -19.4 0.0 0.0 0.0 1FP
HOH
 9.792
3.172
 OH
N
 NAG
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -77.7 -20.9 0.0 0.0 0.0 5AO
HOH
 9.411
3.221
 OH
N
 NAA
O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 X:90 0.0 0.0 S -80.1 -18.3 0.0 0.0 0.0 HOH
 3.263
 N
 O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 X:90 0.0 0.0 S -81.3 -16.7 0.0 0.0 0.0 MIO
MIO
HOH
 3.393
4.604
3.138
 N
N
N
 NAD
NAD
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -80.0 -20.5 0.0 0.0 0.0 5MZ
HOH
 9.249
3.252
 OH
N
 NAA
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 TYR A:49 A:90 0.0 0.0 S -72.8 -25.6 0.0 0.0 0.0 EA4
HOH
 9.288
3.372
 OH
N
 NAB
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 TYR A:48 A:48 0.0 0.0 S -75.3 -20.5 0.0 0.0 0.0 CIT
HOH
 6.857
3.111
 O
N
 O2
O
TYR B:48 B:48 0.0 0.0 S -79.2 -16.4 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 TYR A:48 A:48 0.0 0.0 S -74.1 -20.1 0.0 0.0 0.0 K
FMT
HOH
 9.402
5.847
3.238
 C
N
N
 K
O2
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 TYR A:48 A:48 0.0 0.0 S -75.0 -21.0 0.0 0.0 0.0 EDO
4ZM
HOH
 4.234
9.769
3.193
 C
OH
N
 C2
C10
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 TYR A:48 A:48 0.0 0.0 S -78.7 -20.3 0.0 0.0 0.0 FMT
4ZP
HOH
 5.744
9.876
3.202
 N
OH
N
 O2
C3
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 TYR A:48 A:48 0.0 0.0 S -78.5 -23.0 0.0 0.0 0.0 K
FMT
HOH
 9.361
5.688
3.241
 C
N
N
 K
O2
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 TYR A:48 A:48 0.0 0.0 S -77.4 -19.2 0.0 0.0 0.0 FMT
4ZT
PEG
HOH
 5.834
9.564
8.480
3.235
 N
OH
O
N
 O2
N9
O4
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 TYR A:48 A:48 0.0 0.0 S -79.6 -20.4 0.0 0.0 0.0 12P
HOH
 8.159
3.195
 O
N
 C5
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 TYR A:48 A:48 0.0 0.0 S -78.9 -17.6 0.0 0.0 0.0 HOH
 3.197
 N
 O
TYR B:48 B:48 0.0 0.0 S -78.3 -17.3 0.0 0.0 0.0 HOH
 3.171
 N
 O
TYR C:48 C:48 0.0 0.0 S -82.0 -18.8 0.0 0.0 0.0 HOH
 3.213
 N
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 TYR A:47 A:90 0.0 0.0 S -80.7 -18.0 0.0 0.0 0.0 HOH
 3.223
 N
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 A:90 0.0 0.0 S -76.1 -18.3 0.0 0.0 0.0 53Z
HOH
 9.596
3.328
 OH
N
 NAA
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 A:90 0.0 0.0 S -75.7 -21.9 0.0 0.0 0.0 671
HOH
 9.704
3.339
 OH
N
 NAA
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 X:90 0.0 0.0 S -77.6 -19.4 0.0 0.0 0.0 67Z
HOH
 9.517
3.201
 OH
N
 NAC
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 A:90 0.0 0.0 S -77.4 -20.6 0.0 0.0 0.0 6B4
HOH
 9.931
3.236
 OH
N
 N3
O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 X:90 0.0 0.0 S -76.8 -19.3 0.0 0.0 0.0 7I6
HOH
 9.004
2.937
 HH
H
 NAC
O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 X:90 0.0 0.0 S -74.2 -20.2 0.0 0.0 0.0 728
HOH
 9.633
3.238
 OH
N
 NAG
O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 TYR A:47 X:90 0.0 0.0 S -75.3 -19.0 0.0 0.0 0.0 7B7
HOH
 9.091
2.962
 HH
H
 NAB
O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 TYR A:47 A:90 0.0 0.0 S -74.4 -20.4 0.0 0.0 0.0 EA4
HOH
 9.827
3.389
 OH
N
 NAB
O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 TYR A:47 A:90 0.0 0.0 S -77.6 -19.2 0.0 0.0 0.0 EA4
HOH
 9.680
3.277
 OH
N
 NAB
O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 TYR A:47 A:90 0.0 0.0 S -78.4 -17.7 0.0 0.0 0.0 7I6
HOH
 9.547
3.244
 OH
N
 NAC
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 TYR A:47 A:48 0.0 0.0 S -73.2 -22.2 0.0 0.0 0.0 FMT
4ZZ
HOH
 5.836
9.885
3.252
 N
OH
N
 O2
C16
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 TYR A:47 A:48 0.0 0.0 S -78.5 -21.7 0.0 0.0 0.0 K
FMT
502
HOH
 9.366
5.710
9.966
3.178
 C
N
OH
N
 K
O2
C6
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -76.0 -23.5 0.0 0.0 0.0 JUZ
HOH
 9.680
3.324
 OH
N
 O33
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -77.1 -22.1 0.0 0.0 0.0 JV2
HOH
 9.769
3.212
 OH
N
 N28
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -78.8 -20.6 0.0 0.0 0.0 JVH
HOH
 9.844
3.283
 OH
N
 N13
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -73.0 -22.0 0.0 0.0 0.0 JVN
HOH
 9.778
3.178
 OH
N
 N9
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -77.3 -21.5 0.0 0.0 0.0 PGE
HOH
 8.111
3.258
 O
N
 C4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -72.6 -23.9 0.0 0.0 0.0 HOH
 3.382
 N
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 TYR A:47 A:90 0.0 0.0 S -76.6 -20.2 0.0 0.0 0.0 HOH
 3.208
 N
 O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 TYR A:48 X:48 0.0 0.0 S -72.4 -17.1 0.0 0.0 0.0 C4Y
HOH
 9.523
3.479
 OH
N
 N16
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 TYR A:48 A:48 0.0 0.0 S -68.4 -18.7 0.0 0.0 0.0 HOH
 4.467
 CD1
 O
TYR B:48 B:48 0.0 0.0 S -68.0 -18.4 NA NA NA
TYR C:48 C:48 0.0 0.0 S -68.5 -17.9 NA NA NA
TYR D:48 D:48 0.0 0.0 S -68.8 -18.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 TYR A:90 A:90 0.0 0.0 S -77.8 -17.5