Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81109469 . G A CCDS7358.1:NM_005729.3:c.275gGc>gAc_NP_005720.1:p.92G>D Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:50 X:50 46.0 0.613 T 90.2 -10.6 46.0 0.613 0.0 HOH
 2.843
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:50 X:50 48.0 0.64 T 87.7 -8.5 48.0 0.64 0.0 HOH
 2.651
 O
 O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:50 A:50 46.0 0.613 T 85.8 -2.3 46.0 0.613 0.0 HOH
 2.726
 O
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:50 A:50 43.0 0.573 T 96.1 -15.2 43.0 0.573 0.0 HOH
 4.969
 N
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 GLY A:50 A:50 45.0 0.6 T 92.5 -9.6 45.0 0.6 0.0 HOH
 2.872
 O
 O
GLY B:50 B:50 47.0 0.627 T 88.6 -3.4 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 45.0 0.6 T 90.7 -3.2 45.0 0.6 0.0 HOH
 3.739
 O
 O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 48.0 0.64 T 89.5 -7.5 48.0 0.64 0.0 HOH
 2.759
 O
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 47.0 0.627 T 89.6 -10.5 47.0 0.627 0.0 HOH
 2.825
 O
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 44.0 0.587 T 91.1 -8.5 44.0 0.587 0.0 HOH
 2.791
 O
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 45.0 0.6 T 90.6 -11.4 45.0 0.6 0.0 HOH
 2.771
 O
 O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 45.0 0.6 T 91.7 -7.8 45.0 0.6 0.0 HOH
 2.710
 O
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 49.0 0.653 T 90.9 -9.3 49.0 0.653 0.0 HOH
 2.753
 O
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 47.0 0.627 T 85.3 -4.5 47.0 0.627 0.0 HOH
 2.022
 HA3
 H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 X:92 50.0 0.667 T 88.5 -8.1 50.0 0.667 0.0 HOH
 2.745
 O
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 X:92 50.0 0.667 T 90.4 -6.4 50.0 0.667 0.0 HOH
 2.934
 O
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 48.0 0.64 T 91.8 -9.4 48.0 0.64 0.0 HOH
 2.750
 O
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 X:92 46.0 0.613 T 90.0 -7.7 46.0 0.613 0.0 HOH
 2.640
 O
 O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 X:92 49.0 0.653 T 89.7 -4.1 49.0 0.653 0.0 MIO
MIO
HOH
 5.993
5.584
2.805
 N
N
O
 NAD
CAA
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 45.0 0.6 T 90.4 -9.0 45.0 0.6 0.0 HOH
 2.674
 O
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:51 A:92 39.0 0.52 T 93.5 -12.2 39.0 0.52 0.0 HOH
 3.587
 C
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 GLY A:50 A:50 46.0 0.613 T 90.4 -8.0 46.0 0.613 0.0 CIT
HOH
 2.652
2.847
 O
O
 O2
O
GLY B:50 B:50 35.0 0.467 T 87.9 -6.9 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:50 A:50 50.0 0.667 T 90.2 -3.9 50.0 0.667 0.0 K
FMT
HOH
 9.634
7.037
4.340
 N
N
CA
 K
O2
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:50 A:50 51.0 0.68 T 92.3 -4.9 51.0 0.68 0.0 EDO
4ZM
HOH
 4.633
8.476
3.897
 N
O
CA
 C2
C11
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:50 A:50 50.0 0.667 T 87.0 -2.4 50.0 0.667 0.0 FMT
HOH
 6.985
4.142
 N
N
 O2
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:50 A:50 51.0 0.68 T 88.4 -0.4 51.0 0.68 0.0 K
FMT
HOH
 9.514
6.885
3.703
 N
N
CA
 K
O2
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:50 A:50 49.0 0.653 T 85.7 -2.6 49.0 0.653 0.0 FMT
PEG
HOH
 6.930
3.578
4.098
 N
O
N
 O2
O4
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 GLY A:50 A:50 46.0 0.613 T 87.9 2.8 46.0 0.613 0.0 12P
HOH
 3.174
3.865
 O
CA
 C5
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 GLY A:50 A:50 47.0 0.627 T 82.0 5.3 47.0 0.627 0.0 HOH
 3.751
 C
 O
GLY B:50 B:50 44.0 0.587 T 93.5 -12.4 44.0 0.587 0.0 HOH
 5.237
 N
 O
GLY C:50 C:50 48.0 0.64 T 83.5 5.4 0.0 0.0 0.64 B:P30405:0.64
 HOH
 3.985
 C
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 GLY A:49 A:92 48.0 0.64 T 95.2 -7.7 48.0 0.64 0.0 HOH
 3.971
 CA
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 A:92 42.0 0.56 T 90.3 -9.0 42.0 0.56 0.0 HOH
 3.007
 O
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 A:92 42.0 0.56 T 89.0 -10.6 42.0 0.56 0.0 HOH
 2.838
 O
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 X:92 44.0 0.587 T 95.4 -7.6 44.0 0.587 0.0 HOH
 2.988
 O
 O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 A:92 46.0 0.613 T 85.2 3.1 46.0 0.613 0.0 HOH
 3.921
 CA
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 X:92 43.0 0.573 T 89.6 -7.6 43.0 0.573 0.0 HOH
 2.851
 O
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 X:92 40.0 0.533 T 89.8 -7.5 40.0 0.533 0.0 HOH
 2.941
 O
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:49 X:92 38.0 0.507 T 91.2 -6.8 38.0 0.507 0.0 HOH
 2.870
 O
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:49 A:92 45.0 0.6 T 84.4 -1.1 45.0 0.6 0.0 HOH
 5.216
 O
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:49 A:92 46.0 0.613 T 92.6 -12.4 46.0 0.613 0.0 HOH
 4.049
 N
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:49 A:92 48.0 0.64 T 92.9 -9.3 48.0 0.64 0.0 HOH
 3.965
 CA
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:49 A:50 51.0 0.68 T 79.4 0.6 51.0 0.68 0.0 FMT
HOH
 6.961
3.813
 N
CA
 O2
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:49 A:50 46.0 0.613 T 87.7 -6.4 46.0 0.613 0.0 K
FMT
HOH
 9.565
6.958
3.983
 N
N
C
 K
O2
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 50.0 0.667 T 84.0 1.2 50.0 0.667 0.0 HOH
 3.268
 O
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 47.0 0.627 T 90.1 4.1 47.0 0.627 0.0 HOH
 3.700
 CA
 O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 50.0 0.667 T 87.4 -1.2 50.0 0.667 0.0 HOH
 3.962
 C
 O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 50.0 0.667 T 85.9 -1.2 50.0 0.667 0.0 HOH
 2.827
 O
 O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 49.0 0.653 T 87.7 -4.3 49.0 0.653 0.0 PGE
HOH
 3.070
3.617
 O
CA
 C4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 43.0 0.573 T 89.4 -13.6 43.0 0.573 0.0 HOH
 2.755
 O
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:49 A:92 48.0 0.64 T 84.1 3.6 48.0 0.64 0.0 HOH
 4.052
 CA
 O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 GLY A:50 X:50 45.0 0.6 T 90.1 -11.6 45.0 0.6 0.0 HOH
 4.765
 N
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 GLY A:50 A:50 47.0 0.627 T 88.6 0.5 47.0 0.627 0.0 HOH
 3.270
 O
 O
GLY B:50 B:50 46.0 0.613 T 89.0 0.7 NA NA NA
GLY C:50 C:50 47.0 0.627 T 88.6 0.4 NA NA NA
GLY D:50 D:50 48.0 0.64 T 88.4 0.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 GLY A:92 A:92 37.0 0.493 T 82.3 -7.5