Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81109472 . C A CCDS7358.1:NM_005729.3:c.278tCc>tAc_NP_005720.1:p.93S>Y Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 SER A:51 X:51 1.0 0.009 -86.5 178.4 1.0 0.009 0.0 HOH
 2.505
 OG
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 SER A:51 X:51 1.0 0.009 -88.4 -179.0 1.0 0.009 0.0 HOH
 2.682
 OG
 O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 SER A:51 A:51 2.0 0.017 -93.7 -178.3 2.0 0.017 0.0 HOH
 2.636
 OG
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 SER A:51 A:51 1.0 0.009 -85.7 173.1 1.0 0.009 0.0 HOH
 2.316
 OG
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 SER A:51 A:51 1.0 0.009 -90.9 171.8 1.0 0.009 0.0 HOH
 3.485
 N
 O
SER B:51 B:51 1.0 0.009 -88.7 172.8 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -92.0 175.0 1.0 0.009 0.0 HOH
 2.501
 OG
 O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -88.6 -179.8 1.0 0.009 0.0 HOH
 2.598
 OG
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 0.0 0.0 -88.5 -178.1 0.0 0.0 0.0 HOH
 2.638
 OG
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -85.8 174.9 1.0 0.009 0.0 HOH
 2.518
 OG
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 2.0 0.017 -84.4 -178.5 2.0 0.017 0.0 HOH
 2.592
 OG
 O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 0.0 0.0 -87.8 177.4 0.0 0.0 0.0 HOH
 2.498
 OG
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -88.7 -178.3 1.0 0.009 0.0 HOH
 2.602
 OG
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 0.0 0.0 -92.0 -177.8 0.0 0.0 0.0 HOH
 2.144
 HB3
 H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 X:93 1.0 0.009 -90.6 -178.4 1.0 0.009 0.0 HOH
 2.672
 OG
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 X:93 1.0 0.009 -92.3 -180.0 1.0 0.009 0.0 HOH
 2.644
 OG
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -88.0 -179.9 1.0 0.009 0.0 HOH
 2.605
 OG
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 X:93 0.0 0.0 -88.6 -179.3 0.0 0.0 0.0 HOH
 2.609
 OG
 O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 X:93 1.0 0.009 -91.0 -179.0 1.0 0.009 0.0 MIO
MIO
HOH
 7.327
6.722
2.638
 OG
N
OG
 NAD
CAA
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -85.1 177.5 1.0 0.009 0.0 HOH
 2.528
 OG
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 SER A:52 A:93 1.0 0.009 -82.8 172.3 1.0 0.009 0.0 HOH
 3.519
 N
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 SER A:51 A:51 1.0 0.009 -85.1 178.9 1.0 0.009 0.0 CIT
HOH
 3.565
2.567
 CA
OG
 O2
O
SER B:51 B:51 0.0 0.0 -90.9 162.4 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 SER A:51 A:51 1.0 0.009 -91.6 179.6 1.0 0.009 0.0 FMT
HOH
 9.115
2.647
 N
OG
 O2
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 SER A:51 A:51 2.0 0.017 -93.2 -175.9 2.0 0.017 0.0 EDO
4ZM
HOH
 4.985
7.469
2.651
 N
C
OG
 O2
C5
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 SER A:51 A:51 2.0 0.017 -95.4 -176.7 2.0 0.017 0.0 FMT
HOH
 9.012
2.675
 N
OG
 O2
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 SER A:51 A:51 2.0 0.017 -97.7 -176.7 2.0 0.017 0.0 FMT
HOH
 8.944
2.627
 N
OG
 O2
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 SER A:51 A:51 2.0 0.017 -95.0 -179.8 2.0 0.017 0.0 FMT
PEG
HOH
 9.026
5.426
2.667
 N
CA
OG
 O2
O4
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 SER A:51 A:51 1.0 0.009 -97.8 -178.1 1.0 0.009 0.0 12P
HOH
 5.210
2.582
 CA
OG
 C5
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 SER A:51 A:51 0.0 0.0 -96.7 -179.6 0.0 0.0 0.0 HOH
 2.553
 OG
 O
SER B:51 B:51 1.0 0.009 -82.0 171.8 1.0 0.009 0.0 HOH
 2.338
 OG
 O
SER C:51 C:51 2.0 0.017 -93.6 -173.9 1.0 0.009 0.008 B:P30405:0.009
 HOH
 2.392
 OG
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 SER A:50 A:93 2.0 0.017 -88.7 173.1 2.0 0.017 0.0 HOH
 2.375
 OG
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 A:93 1.0 0.009 -85.4 171.0 1.0 0.009 0.0 HOH
 2.317
 OG
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 A:93 0.0 0.0 -81.6 176.9 0.0 0.0 0.0 HOH
 3.578
 CB
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 X:93 1.0 0.009 -88.9 174.2 1.0 0.009 0.0 HOH
 2.356
 OG
 O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 A:93 1.0 0.009 -90.9 178.5 1.0 0.009 0.0 HOH
 2.420
 OG
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 X:93 0.0 0.0 -89.6 176.1 0.0 0.0 0.0 HOH
 2.443
 OG
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 X:93 0.0 0.0 -83.9 171.9 0.0 0.0 0.0 HOH
 2.289
 OG
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 SER A:50 X:93 0.0 0.0 -88.6 173.5 0.0 0.0 0.0 HOH
 2.421
 OG
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 SER A:50 A:93 1.0 0.009 -88.9 173.4 1.0 0.009 0.0 HOH
 3.716
 CB
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 SER A:50 A:93 2.0 0.017 -84.1 169.5 2.0 0.017 0.0 HOH
 3.642
 CA
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 SER A:50 A:93 2.0 0.017 -88.5 175.9 2.0 0.017 0.0 HOH
 2.450
 OG
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 SER A:50 A:51 2.0 0.017 -95.7 -177.3 2.0 0.017 0.0 FMT
HOH
 9.060
2.759
 N
OG
 O2
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 SER A:50 A:51 2.0 0.017 -91.6 -179.9 2.0 0.017 0.0 FMT
HOH
 9.011
2.565
 N
OG
 O2
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -96.9 174.1 1.0 0.009 0.0 HOH
 2.666
 OG
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -102.1 177.3 1.0 0.009 0.0 HOH
 2.548
 OG
 O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -98.5 178.0 1.0 0.009 0.0 HOH
 2.617
 OG
 O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -96.0 -179.8 1.0 0.009 0.0 HOH
 2.589
 OG
 O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -93.9 179.0 1.0 0.009 0.0 PGE
HOH
 5.218
2.587
 N
OG
 C4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -80.3 172.3 1.0 0.009 0.0 HOH
 2.587
 OG
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 SER A:50 A:93 1.0 0.009 -93.2 176.5 1.0 0.009 0.0 HOH
 2.645
 OG
 O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 SER A:51 X:51 1.0 0.009 -92.5 177.0 1.0 0.009 0.0 HOH
 3.279
 CB
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 SER A:51 A:51 1.0 0.009 -88.9 175.5 1.0 0.009 0.0 HOH
 2.671
 OG
 O
SER B:51 B:51 1.0 0.009 -86.5 177.0 NA NA NA
SER C:51 C:51 1.0 0.009 -88.0 -176.9 NA NA NA
SER D:51 D:51 1.0 0.009 -87.3 -176.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 SER A:93 A:93 0.0 0.0 -73.4 167.7