Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81109501 . A C CCDS7358.1:NM_005729.3:c.307Atg>Ctg_NP_005720.1:p.103M>L Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 MET A:61 X:61 2.0 0.011 E -165.7 166.4 2.0 0.011 0.0 HOH
 4.107
 CG
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 MET A:61 X:61 3.0 0.016 E -168.2 164.5 3.0 0.016 0.0 DMS
DMS
DMS
HOH
 8.010
3.901
6.696
5.727
 CE
SD
CE
CE
 C1
S
C2
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 MET A:61 A:61 1.0 0.005 E -167.5 165.0 1.0 0.005 0.0 PEG
HOH
 3.827
6.024
 SD
CE
 C1
O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 MET A:61 A:61 3.0 0.016 E -167.1 164.9 3.0 0.016 0.0 HOH
 3.573
 CE
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 MET A:61 A:61 3.0 0.016 E -162.1 165.7 0.0 0.0 0.016 C:None:0.016
 HOH
 3.250
 N
 O
MET B:61 B:61 3.0 0.016 E -167.3 165.6 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 2.0 0.011 E -167.1 163.9 2.0 0.011 0.0 Q8A
HOH
 9.267
3.900
 CE
CE
 CAC
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 1.0 0.005 E -168.3 164.1 1.0 0.005 0.0 HOH
 6.777
 N
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 2.0 0.011 E -167.3 164.9 2.0 0.011 0.0 FP6
HOH
 3.931
3.780
 SD
CE
 CAF
O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 3.0 0.016 E -164.5 162.0 3.0 0.016 0.0 HOH
 6.500
 N
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 4.0 0.022 E -165.6 161.0 4.0 0.022 0.0 N3M
N3M
GOL
HOH
 3.774
9.690
6.496
4.508
 SD
CE
N
SD
 NAB
CAA
C2
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 2.0 0.011 E -167.4 166.0 2.0 0.011 0.0 3AO
HOH
 8.078
3.952
 CE
CG
 OAC
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 3.0 0.016 E -165.4 164.7 3.0 0.016 0.0 BS4
HOH
 3.995
4.417
 SD
SD
 NAA
O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 1.0 0.005 E -167.6 165.5 1.0 0.005 0.0 DMF
HOH
 2.780
2.945
 HG2
HE1
 H11
H1
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 X:103 1.0 0.005 E -165.9 165.4 1.0 0.005 0.0 M3I
M3I
M3I
HOH
 3.874
6.935
8.909
5.695
 SD
CE
CE
CE
 CAA
OAE
CAA
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 X:103 9.0 0.049 E -166.7 156.8 9.0 0.049 0.0 1FP
HOH
 6.619
6.966
 N
N
 NAH
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 1.0 0.005 E -168.2 164.7 1.0 0.005 0.0 HOH
 4.119
 CG
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 X:103 1.0 0.005 E -167.6 165.7 1.0 0.005 0.0 MSY
PEG
HOH
 6.070
9.173
4.189
 CE
N
CG
 O2
C1
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 X:103 2.0 0.011 E -169.7 164.6 2.0 0.011 0.0 HOH
 6.945
 N
 O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 2.0 0.011 E -167.7 164.9 2.0 0.011 0.0 HOH
 6.433
 N
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 MET A:62 A:103 0.0 0.0 E -168.5 165.6 0.0 0.0 0.0 EA4
HOH
 4.016
6.480
 CG
CE
 CAA
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 MET A:61 A:61 3.0 0.016 E -165.8 167.0 0.0 0.0 0.016 C:NOR00033:0.016
 HOH
 3.096
 O
 O
MET B:61 B:61 3.0 0.016 E -168.2 165.6 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 MET A:61 A:61 2.0 0.011 E -165.6 163.2 2.0 0.011 0.0 4ZL
K
PGE
HOH
 3.888
9.140
6.630
6.340
 CG
N
N
CE
 CAP
K
C5
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 MET A:61 A:61 2.0 0.011 E -164.0 161.2 2.0 0.011 0.0 K
PGE
4ZM
4ZM
HOH
 9.246
6.840
3.876
8.497
5.966
 N
N
CG
CE
CE
 K
C4
C
C
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 MET A:61 A:61 1.0 0.005 E -168.5 161.6 1.0 0.005 0.0 K
PGE
4ZP
HOH
 9.230
6.741
3.844
6.004
 N
N
CG
CE
 K
C5
C23
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 MET A:61 A:61 1.0 0.005 E -165.7 162.0 1.0 0.005 0.0 K
PGE
4ZO
HOH
 9.336
6.665
3.839
6.280
 N
N
CG
CE
 K
C5
CAP
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 MET A:61 A:61 2.0 0.011 E -169.5 161.5 2.0 0.011 0.0 K
PGE
4ZT
HOH
 9.419
6.898
3.889
6.325
 N
N
CG
CE
 K
C4
C19
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 MET A:61 A:61 5.0 0.027 E -165.3 166.9 5.0 0.027 0.0 NA
HOH
 6.945
3.178
 N
O
 NA
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 MET A:61 A:61 5.0 0.027 E -165.3 166.3 5.0 0.027 0.0 HOH
 6.076
 N
 O
MET B:61 B:61 5.0 0.027 E -168.4 164.9 5.0 0.027 0.0 HOH
 6.766
 CE
 O
MET C:61 C:61 6.0 0.032 E -166.6 166.0 6.0 0.032 0.0 HOH
 6.522
 N
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 MET A:60 A:103 7.0 0.038 E -167.5 157.7 7.0 0.038 0.0 HOH
 7.087
 N
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 A:103 0.0 0.0 E -166.3 164.9 0.0 0.0 0.0 53Z
PO4
HOH
 3.592
9.756
4.701
 SD
CG
CE
 CAH
O3
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 A:103 0.0 0.0 E -168.3 170.0 0.0 0.0 0.0 671
HOH
 3.402
6.493
 SD
CE
 CAQ
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 X:103 0.0 0.0 E -167.3 165.4 0.0 0.0 0.0 67Z
HOH
 3.499
6.491
 SD
N
 CAP
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 A:103 0.0 0.0 E -163.4 167.6 0.0 0.0 0.0 6B4
HOH
 3.420
6.603
 SD
N
 CAP
O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 X:103 0.0 0.0 E -166.8 166.2 0.0 0.0 0.0 7I6
HOH
 3.107
5.820
 HE2
N
 CAQ
O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 X:103 0.0 0.0 E -168.0 168.4 0.0 0.0 0.0 728
HOH
 3.520
6.860
 SD
N
 CAS
O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 MET A:60 X:103 0.0 0.0 E -168.8 166.6 0.0 0.0 0.0 7B7
HOH
 2.945
5.824
 HE2
N
 CAP
O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 MET A:60 A:103 0.0 0.0 E -167.8 164.7 0.0 0.0 0.0 EA4
HOH
 3.983
5.652
 CG
CE
 CAA
O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 MET A:60 A:103 0.0 0.0 E -167.3 166.1 0.0 0.0 0.0 EA4
HOH
 3.957
5.667
 CG
CE
 CAA
O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 MET A:60 A:103 0.0 0.0 E -166.5 166.3 0.0 0.0 0.0 7I6
HOH
 3.565
7.102
 SD
N
 CAQ
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 MET A:60 A:61 2.0 0.011 E -166.6 160.2 2.0 0.011 0.0 K
PGE
4ZZ
HOH
 9.292
6.611
3.872
6.182
 N
N
CG
CE
 K
C5
C1
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 MET A:60 A:61 1.0 0.005 E -167.4 159.7 1.0 0.005 0.0 K
PGE
502
HOH
 9.119
6.564
3.853
6.018
 N
N
CG
CE
 K
C5
C17
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 5.0 0.027 E -165.0 167.2 5.0 0.027 0.0 JUZ
HOH
 3.559
6.857
 SD
N
 C12
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 4.0 0.022 E -169.1 167.5 4.0 0.022 0.0 JV2
HOH
 3.604
6.841
 SD
N
 C10
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 8.0 0.043 E -169.5 161.3 8.0 0.043 0.0 O4B
JVH
HOH
 6.636
3.924
6.351
 N
SD
CE
 CAC
C38
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 1.0 0.005 E -162.0 170.2 1.0 0.005 0.0 1PE
HOH
 3.789
6.680
 SD
CE
 C12
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 5.0 0.027 E -167.3 166.1 5.0 0.027 0.0 JVQ
PGE
PGE
HOH
 9.670
7.388
3.775
3.922
 CE
CG
SD
CE
 C9
O4
C6
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 3.0 0.016 E -167.0 168.7 3.0 0.016 0.0 JW2
HOH
 3.671
5.833
 CG
CE
 C6
O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 MET A:60 A:103 8.0 0.043 E -165.9 164.7 8.0 0.043 0.0 JWB
PEG
SO4
HOH
 3.887
6.621
8.585
6.826
 CE
N
CE
N
 C9
O4
O2
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 MET A:61 X:61 5.0 0.027 E -173.4 164.1 5.0 0.027 0.0 C4Y
HOH
 3.484
6.935
 SD
N
 C27
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 MET A:61 A:61 4.0 0.022 E -169.3 167.9 0.0 0.0 0.022 E:None:0.022
 HOH
 7.069
 CE
 O
MET B:61 B:61 3.0 0.016 E -169.2 167.7 NA NA NA
MET C:61 C:61 3.0 0.016 E -170.1 164.7 NA NA NA
MET D:61 D:61 3.0 0.016 E -164.4 171.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 MET A:103 A:103 4.0 0.022 E -166.3 163.7