Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81111244 . C A CCDS7358.1:NM_005729.3:c.317gCg>gAg_NP_005720.1:p.106A>E Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ALA A:64 X:64 0.0 0.0 E -148.3 -174.5 0.0 0.0 0.0 HOH
 3.536
 CB
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ALA A:64 X:64 0.0 0.0 E -148.5 -172.4 0.0 0.0 0.0 DMS
DMS
DMS
HOH
 8.733
7.119
8.795
3.505
 N
N
O
CB
 C1
C2
O
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ALA A:64 A:64 0.0 0.0 E -146.6 -171.5 0.0 0.0 0.0 PEG
HOH
 7.414
3.445
 N
CB
 O1
O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ALA A:64 A:64 0.0 0.0 E -145.2 -175.5 0.0 0.0 0.0 HOH
 3.299
 CB
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 ALA A:64 A:64 0.0 0.0 E -150.5 176.8 0.0 0.0 0.0 HOH
 3.836
 C
 O
ALA B:64 B:64 0.0 0.0 E -153.0 -177.3 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -155.0 -176.2 0.0 0.0 0.0 Q8A
HOH
 7.284
3.580
 O
CB
 CAE
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.6 -173.5 0.0 0.0 0.0 GOL
GOL
HOH
 7.574
7.941
3.440
 O
N
CB
 O2
O3
O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.3 -170.5 0.0 0.0 0.0 FP6
HOH
 7.793
3.378
 N
CB
 CAF
O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -148.1 -175.3 0.0 0.0 0.0 6AI
HOH
 7.398
3.316
 O
CB
 CAB
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.4 -171.7 0.0 0.0 0.0 N3M
N3M
HOH
 7.320
8.593
3.407
 O
N
CB
 CAE
NAB
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.5 -173.6 0.0 0.0 0.0 3AO
HOH
 7.067
3.383
 O
CB
 OAC
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.3 -173.2 0.0 0.0 0.0 BS4
HOH
 7.689
3.475
 N
CB
 NAA
O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -148.2 -171.4 0.0 0.0 0.0 DMF
HOH
 6.657
2.312
 H
HB2
 H13
H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 X:106 0.0 0.0 E -148.3 -171.0 0.0 0.0 0.0 M3I
M3I
M3I
HOH
 7.831
7.669
6.711
3.432
 O
O
O
CB
 OAE
OAE
OAE
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 X:106 0.0 0.0 E -151.3 -172.1 0.0 0.0 0.0 1FP
1FP
1FP
HOH
 7.938
7.240
8.311
3.445
 O
O
O
CB
 CAE
CAB
CAB
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -148.3 -173.0 0.0 0.0 0.0 5AO
HOH
 7.534
3.441
 O
CB
 CAC
O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 X:106 0.0 0.0 E -148.7 -171.5 0.0 0.0 0.0 MSY
HOH
 7.454
3.385
 O
CB
 CA5
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 X:106 0.0 0.0 E -147.5 -172.5 0.0 0.0 0.0 MIO
MIO
MIO
HOH
 8.357
8.188
7.179
3.507
 N
O
O
CB
 CAA
OAE
CAA
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -149.1 -175.1 0.0 0.0 0.0 5MZ
HOH
 7.404
3.418
 O
CB
 CAD
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ALA A:65 A:106 0.0 0.0 E -153.9 -175.8 0.0 0.0 0.0 EA4
HOH
 7.369
4.243
 O
C
 CAE
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 ALA A:64 A:64 0.0 0.0 E -150.6 -174.6 0.0 0.0 0.0 HOH
 3.492
 CB
 O
ALA B:64 B:64 0.0 0.0 E -152.4 179.2 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ALA A:64 A:64 0.0 0.0 E -149.3 -176.4 0.0 0.0 0.0 4ZL
HOH
 7.514
3.527
 O
CB
 CAA
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ALA A:64 A:64 0.0 0.0 E -148.6 -171.8 0.0 0.0 0.0 4ZM
4ZM
HOH
 7.189
8.863
3.599
 O
CA
CB
 C10
N1
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ALA A:64 A:64 0.0 0.0 E -147.0 -172.3 0.0 0.0 0.0 4ZP
HOH
 7.182
3.565
 O
CB
 C2
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ALA A:64 A:64 0.0 0.0 E -146.0 -172.4 0.0 0.0 0.0 4ZO
HOH
 7.487
3.565
 O
CB
 CAE
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ALA A:64 A:64 0.0 0.0 E -150.3 -172.6 0.0 0.0 0.0 4ZT
HOH
 7.460
3.521
 O
CB
 C7
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 ALA A:64 A:64 0.0 0.0 E -147.9 -173.3 0.0 0.0 0.0 HOH
 3.415
 CB
 O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 ALA A:64 A:64 0.0 0.0 E -148.5 -172.1 0.0 0.0 0.0 HOH
 3.352
 CB
 O
ALA B:64 B:64 0.0 0.0 E -147.6 -175.4 0.0 0.0 0.0 HOH
 3.215
 CB
 O
ALA C:64 C:64 0.0 0.0 E -148.4 -172.7 0.0 0.0 0.0 HOH
 3.486
 CB
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 ALA A:63 A:106 0.0 0.0 E -148.2 -176.6 0.0 0.0 0.0 HOH
 3.618
 CB
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 A:106 0.0 0.0 E -150.9 179.5 0.0 0.0 0.0 53Z
HOH
 7.553
3.498
 O
CB
 CAD
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 A:106 0.0 0.0 E -146.7 -176.7 0.0 0.0 0.0 671
HOH
 7.714
3.894
 O
C
 CAJ
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 X:106 0.0 0.0 E -147.9 -175.1 0.0 0.0 0.0 67Z
HOH
 7.517
3.463
 O
CB
 CAG
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 A:106 0.0 0.0 E -153.1 -174.2 0.0 0.0 0.0 6B4
HOH
 7.596
3.516
 O
CB
 CAK
O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 X:106 0.0 0.0 E -148.8 -175.4 0.0 0.0 0.0 7I6
HOH
 7.525
2.489
 O
HB1
 CAJ
O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 X:106 0.0 0.0 E -149.2 -178.7 0.0 0.0 0.0 728
HOH
 7.607
3.505
 O
CB
 CAA
O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ALA A:63 X:106 0.0 0.0 E -149.6 -179.4 0.0 0.0 0.0 7B7
HOH
 7.470
2.417
 H
HB1
 CAQ
O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ALA A:63 A:106 0.0 0.0 E -151.7 -177.9 0.0 0.0 0.0 EA4
HOH
 7.699
3.959
 O
C
 CAF
O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ALA A:63 A:106 0.0 0.0 E -152.9 179.3 0.0 0.0 0.0 EA4
HOH
 7.618
3.803
 O
C
 CAF
O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ALA A:63 A:106 0.0 0.0 E -151.1 -178.4 0.0 0.0 0.0 7I6
HOH
 7.621
3.579
 O
CB
 CAJ
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ALA A:63 A:64 0.0 0.0 E -145.4 -175.5 0.0 0.0 0.0 4ZZ
HOH
 7.305
3.519
 O
CB
 C17
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ALA A:63 A:64 0.0 0.0 E -148.0 -175.6 0.0 0.0 0.0 502
HOH
 7.478
3.526
 O
CB
 C6
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -147.8 -167.8 0.0 0.0 0.0 JUZ
HOH
 7.199
3.383
 O
CB
 C22
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -150.3 -174.9 0.0 0.0 0.0 JV2
HOH
 7.562
3.533
 O
CB
 C31
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -148.8 -171.0 0.0 0.0 0.0 JVH
HOH
 7.441
3.575
 N
CB
 C34
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -147.2 -171.9 0.0 0.0 0.0 JVN
1PE
HOH
 7.713
7.401
3.471
 O
N
CB
 C2
OH2
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -149.0 -173.7 0.0 0.0 0.0 JVQ
PGE
HOH
 7.531
7.379
3.435
 O
N
CB
 C9
O4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -151.8 -171.2 0.0 0.0 0.0 JW2
HOH
 7.565
3.315
 N
CB
 C5
O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ALA A:63 A:106 0.0 0.0 E -150.4 -173.5 0.0 0.0 0.0 JWB
JVQ
SO4
HOH
 7.795
7.687
9.271
3.411
 O
O
N
CB
 O3
O10
O3
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 ALA A:64 X:64 0.0 0.0 E -146.6 -179.3 0.0 0.0 0.0 C4Y
HOH
 7.714
3.851
 O
C
 C5
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 ALA A:64 A:64 0.0 0.0 E -147.5 -168.2 0.0 0.0 0.0 HOH
 3.336
 CB
 O
ALA B:64 B:64 0.0 0.0 E -143.9 -173.3 NA NA NA
ALA C:64 C:64 0.0 0.0 E -143.1 -170.2 NA NA NA
ALA D:64 D:64 0.0 0.0 E -143.2 -174.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 ALA A:106 A:106 0.0 0.0 E -146.6 -168.1