Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81111267 . G A CCDS7358.1:NM_005729.3:c.340Ggc>Agc_NP_005720.1:p.114G>S Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:72 X:72 29.0 0.387 S 104.2 -9.3 29.0 0.387 0.0 HOH
 2.614
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:72 X:72 30.0 0.4 S 104.8 -11.6 30.0 0.4 0.0 DMS
DMS
DMS
DMS
HOH
 4.978
9.269
7.135
6.808
3.010
 CA
CA
O
O
O
 C1
C2
S
C1
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:72 A:72 30.0 0.4 S 103.4 -7.4 30.0 0.4 0.0 PEG
HOH
 9.000
2.720
 O
O
 O1
O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:72 A:72 29.0 0.387 S 105.4 -9.8 29.0 0.387 0.0 HOH
 3.459
 O
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 GLY A:72 A:72 25.0 0.333 S 108.1 -10.4 2.0 0.027 0.306 C:None:0.307
 HOH
 3.357
 CA
 O
GLY B:72 B:72 30.0 0.4 S 90.5 -11.0 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 27.0 0.36 S 103.4 1.2 27.0 0.36 0.0 Q8A
HOH
 3.120
3.150
 O
CA
 CAF
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 30.0 0.4 S 103.0 -7.8 30.0 0.4 0.0 GOL
GOL
GOL
HOH
 2.636
6.522
9.096
2.703
 O
O
O
O
 O3
C3
O2
O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 30.0 0.4 S 101.4 -8.5 30.0 0.4 0.0 FP6
HOH
 7.589
2.807
 O
O
 OAA
O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 27.0 0.36 S 103.4 -1.1 27.0 0.36 0.0 6AI
HOH
 2.988
3.141
 O
CA
 CAD
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 30.0 0.4 S 98.6 -0.4 30.0 0.4 0.0 N3M
N3M
GOL
HOH
 3.285
9.134
8.920
3.116
 O
O
N
O
 CAF
CAA
C3
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 29.0 0.387 S 99.3 -0.8 29.0 0.387 0.0 3AO
HOH
 3.230
2.840
 O
O
 CAF
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 31.0 0.413 S 99.3 -7.1 31.0 0.413 0.0 BS4
BS4
HOH
 9.633
4.839
2.703
 O
O
O
 NAA
NAA
O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 30.0 0.4 S 100.4 -9.7 30.0 0.4 0.0 DMF
HOH
 7.496
2.087
 HA2
O
 HC
H1
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 X:114 30.0 0.4 S 104.2 -9.7 30.0 0.4 0.0 M3I
M3I
M3I
HOH
 7.721
3.332
3.376
2.951
 O
CA
O
O
 NAD
NAD
OAE
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 X:114 29.0 0.387 S 100.7 -6.3 29.0 0.387 0.0 1FP
1FP
1FP
HOH
 3.391
3.140
7.798
4.268
 O
O
O
CA
 OAA
CAF
OAA
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 29.0 0.387 S 102.5 -3.8 29.0 0.387 0.0 5AO
HOH
 3.365
2.801
 O
O
 CAD
O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 X:114 30.0 0.4 S 102.5 -9.2 30.0 0.4 0.0 MSY
HOH
 3.359
2.731
 O
O
 CA4
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 X:114 29.0 0.387 S 101.9 -4.3 29.0 0.387 0.0 MIO
MIO
MIO
HOH
 9.903
6.290
3.138
2.853
 O
O
O
O
 NAD
NAB
CAC
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 30.0 0.4 S 102.0 -3.8 30.0 0.4 0.0 5MZ
HOH
 3.266
2.787
 O
O
 CAE
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:73 A:114 9.0 0.12 S 99.0 7.8 9.0 0.12 0.0 EA4
HOH
 3.220
2.999
 O
O
 CAK
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 GLY A:72 A:72 28.0 0.373 S 100.1 -14.2 1.0 0.013 0.36 C:NOR00033:0.36
 CIT
HOH
 9.164
3.509
 N
CA
 O6
O
GLY B:72 B:72 23.0 0.307 S 83.9 -0.6 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:72 A:72 31.0 0.413 S 97.4 -6.7 31.0 0.413 0.0 4ZL
HOH
 2.982
3.312
 O
CA
 CAG
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:72 A:72 30.0 0.4 S 91.9 -2.2 30.0 0.4 0.0 4ZM
4ZM
HOH
 3.285
4.736
3.624
 O
N
CA
 C5
O1
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:72 A:72 31.0 0.413 S 98.6 -10.4 31.0 0.413 0.0 4ZP
HOH
 3.102
3.441
 O
CA
 C1
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:72 A:72 31.0 0.413 S 95.3 -10.8 31.0 0.413 0.0 4ZO
HOH
 3.226
2.984
 O
O
 CAA
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:72 A:72 29.0 0.387 S 89.4 5.8 29.0 0.387 0.0 PGE
4ZT
PEG
HOH
 7.087
3.096
9.391
2.734
 N
O
N
O
 C6
N1
C1
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 GLY A:72 A:72 25.0 0.333 S 95.8 -1.0 25.0 0.333 0.0 12P
HOH
 9.495
2.985
 N
O
 O1
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 GLY A:72 A:72 22.0 0.293 S 96.1 -1.2 20.0 0.267 0.026 B:P30405:0.027
 HOH
 3.054
 O
 O
GLY B:72 B:72 20.0 0.267 S 101.4 -1.0 19.0 0.253 0.014 A:P30405:0.013
 HOH
 2.927
 O
 O
GLY C:72 C:72 21.0 0.28 S 94.3 -0.3 21.0 0.28 0.0 CIT
HOH
 9.119
3.070
 N
CA
 O1
O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 GLY A:71 A:114 29.0 0.387 S 102.0 -3.4 29.0 0.387 0.0 HOH
 2.713
 O
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 A:114 11.0 0.147 S 100.6 -1.1 11.0 0.147 0.0 53Z
HOH
 3.311
2.801
 O
O
 CAM
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 A:114 9.0 0.12 S 97.1 1.8 9.0 0.12 0.0 671
HOH
 3.335
2.923
 O
O
 CAR
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 X:114 9.0 0.12 S 103.0 -1.7 9.0 0.12 0.0 67Z
HOH
 3.259
2.997
 O
O
 CAO
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 A:114 9.0 0.12 S 97.4 1.4 9.0 0.12 0.0 6B4
HOH
 3.018
3.204
 O
CA
 CAO
O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 X:114 11.0 0.147 S 105.3 -1.9 11.0 0.147 0.0 HOH
 3.885
 HA3
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 X:114 10.0 0.133 S 101.0 1.5 10.0 0.133 0.0 728
HOH
 3.363
2.841
 O
O
 CAH
O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:71 X:114 11.0 0.147 S 101.7 1.8 11.0 0.147 0.0 7B7
HOH
 3.287
2.819
 O
O
 CAO
O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:71 A:114 9.0 0.12 S 91.0 8.6 9.0 0.12 0.0 EA4
HOH
 3.075
3.201
 O
CA
 CAK
O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:71 A:114 8.0 0.107 S 90.0 8.3 8.0 0.107 0.0 EA4
HOH
 3.123
3.380
 O
CA
 CAK
O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:71 A:114 9.0 0.12 S 94.3 2.6 9.0 0.12 0.0 7I6
HOH
 3.344
3.422
 O
CA
 NAT
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:71 A:72 31.0 0.413 S 98.5 -13.9 31.0 0.413 0.0 4ZZ
HOH
 3.079
3.508
 O
CA
 C11
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:71 A:72 31.0 0.413 S 89.1 -1.3 31.0 0.413 0.0 502
HOH
 3.038
3.357
 O
CA
 C1
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 23.0 0.307 S 97.9 1.0 23.0 0.307 0.0 JUZ
HOH
 3.060
3.025
 O
O
 C34
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 22.0 0.293 S 90.0 -1.0 22.0 0.293 0.0 JV2
HOH
 3.101
3.050
 O
O
 C21
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 28.0 0.373 S 92.1 -2.2 28.0 0.373 0.0 JVH
HOH
 3.137
3.014
 O
O
 C8
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 31.0 0.413 S 101.7 -4.6 31.0 0.413 0.0 JVN
JVN
1PE
HOH
 3.205
4.139
8.279
2.860
 O
O
CA
O
 F7
F7
OH7
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 29.0 0.387 S 96.0 -7.1 29.0 0.387 0.0 JVQ
PGE
PGE
HOH
 3.014
9.264
8.612
2.902
 O
N
O
O
 O8
O1
O4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 27.0 0.36 S 101.7 -0.5 27.0 0.36 0.0 JW2
HOH
 3.552
3.244
 O
CA
 N18
O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:71 A:114 20.0 0.267 S 90.4 0.2 20.0 0.267 0.0 JWB
JVQ
SO4
HOH
 4.534
2.985
5.062
2.724
 O
O
N
O
 O3
O8
O3
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 GLY A:72 X:72 28.0 0.373 S 90.3 2.1 28.0 0.373 0.0 C4Y
HOH
 3.311
3.273
 O
O
 C3
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 GLY A:72 A:72 29.0 0.387 S 94.7 -14.7 1.0 0.013 0.374 E:None:0.373
 HOH
 3.504
 CA
 O
GLY B:72 B:72 31.0 0.413 S 99.1 -20.0 NA NA NA
GLY C:72 C:72 29.0 0.387 S 99.3 -12.2 NA NA NA
GLY D:72 D:72 30.0 0.4 S 105.6 -14.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 GLY A:114 A:114 26.0 0.347 S 89.1 0.4