Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81111276 . G A CCDS7358.1:NM_005729.3:c.349Ggg>Agg_NP_005720.1:p.117G>R Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:75 X:75 7.0 0.093 90.1 158.9 7.0 0.093 0.0 HOH
 3.057
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:75 X:75 19.0 0.253 90.0 165.2 19.0 0.253 0.0 DMS
HOH
 3.296
2.837
 O
O
 C1
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:75 A:75 7.0 0.093 91.4 162.5 7.0 0.093 0.0 HOH
 3.015
 O
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:75 A:75 2.0 0.027 96.6 159.3 2.0 0.027 0.0 HOH
 2.744
 O
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 GLY A:75 A:75 20.0 0.267 106.6 170.2 20.0 0.267 0.0 HOH
 3.844
 CA
 O
GLY B:75 B:75 16.0 0.213 91.0 160.0 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 7.0 0.093 93.0 162.1 7.0 0.093 0.0 Q8A
HOH
 6.195
3.175
 O
O
 NAA
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 8.0 0.107 90.9 161.5 8.0 0.107 0.0 GOL
HOH
 7.458
2.802
 N
O
 O3
O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 8.0 0.107 91.7 158.1 8.0 0.107 0.0 HOH
 2.725
 O
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 6.0 0.08 94.9 161.0 6.0 0.08 0.0 6AI
HOH
 5.871
3.519
 O
O
 NAA
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 7.0 0.093 94.9 164.0 7.0 0.093 0.0 N3M
HOH
 6.008
2.740
 O
O
 NAB
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 7.0 0.093 97.4 161.5 7.0 0.093 0.0 3AO
HOH
 6.304
3.220
 O
O
 NAB
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 9.0 0.12 91.7 161.4 9.0 0.12 0.0 HOH
 2.650
 O
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 8.0 0.107 93.9 159.4 8.0 0.107 0.0 HOH
 2.501
 O
 H1
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 X:117 7.0 0.093 91.9 163.2 7.0 0.093 0.0 M3I
HOH
 6.167
2.868
 O
O
 NAB
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 X:117 19.0 0.253 95.6 160.7 19.0 0.253 0.0 1FP
1FP
HOH
 5.121
8.873
2.611
 O
N
O
 CAD
CAF
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 7.0 0.093 93.1 161.4 7.0 0.093 0.0 5AO
HOH
 5.691
2.657
 O
O
 NAA
O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 X:117 7.0 0.093 93.4 158.8 7.0 0.093 0.0 MSY
HOH
 8.998
2.662
 N
O
 CA5
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 X:117 7.0 0.093 87.2 159.7 7.0 0.093 0.0 MIO
HOH
 6.621
2.770
 N
O
 NAD
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 7.0 0.093 90.9 164.0 7.0 0.093 0.0 5MZ
HOH
 6.134
3.156
 O
O
 NAA
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:76 A:117 6.0 0.08 100.5 167.4 6.0 0.08 0.0 EA4
HOH
 5.663
3.776
 O
CA
 NAB
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 GLY A:75 A:75 17.0 0.227 96.7 159.5 17.0 0.227 0.0 HOH
 1.459
 CA
 O
GLY B:75 B:75 11.0 0.147 109.5 156.6 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:75 A:75 20.0 0.267 95.0 164.9 20.0 0.267 0.0 4ZL
HOH
 6.508
3.845
 O
CA
 CAC
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:75 A:75 21.0 0.28 89.5 170.4 21.0 0.28 0.0 EDO
4ZM
HOH
 9.860
5.821
2.637
 CA
O
O
 O2
C13
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:75 A:75 18.0 0.24 89.3 164.8 18.0 0.24 0.0 4ZP
HOH
 5.394
2.903
 O
O
 N10
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:75 A:75 19.0 0.253 87.8 164.1 19.0 0.253 0.0 4ZO
HOH
 5.703
2.776
 O
O
 O4
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:75 A:75 6.0 0.08 91.2 168.4 6.0 0.08 0.0 4ZT
HOH
 5.351
3.680
 O
CA
 N9
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 GLY A:75 A:75 19.0 0.253 95.5 164.3 19.0 0.253 0.0 HOH
 2.922
 O
 O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 GLY A:75 A:75 19.0 0.253 90.8 166.3 19.0 0.253 0.0 HOH
 3.314
 O
 O
GLY B:75 B:75 19.0 0.253 98.8 167.5 19.0 0.253 0.0 HOH
 3.082
 O
 O
GLY C:75 C:75 19.0 0.253 88.4 168.4 19.0 0.253 0.0 HOH
 3.963
 CA
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 GLY A:74 A:117 19.0 0.253 93.2 163.6 19.0 0.253 0.0 HOH
 3.742
 CA
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 A:117 5.0 0.067 101.6 163.8 5.0 0.067 0.0 53Z
HOH
 5.519
3.390
 O
O
 NAA
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 A:117 5.0 0.067 97.9 166.9 5.0 0.067 0.0 671
HOH
 5.594
3.819
 O
CA
 NAA
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 X:117 16.0 0.213 99.1 165.0 16.0 0.213 0.0 67Z
HOH
 5.504
3.731
 O
CA
 NAC
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 A:117 7.0 0.093 97.5 160.6 7.0 0.093 0.0 6B4
HOH
 5.703
3.918
 O
CA
 N3
O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 X:117 5.0 0.067 99.7 164.8 5.0 0.067 0.0 7I6
HOH
 5.319
2.844
 HA3
O
 NAC
O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 X:117 6.0 0.08 100.5 163.8 6.0 0.08 0.0 728
HOH
 5.368
3.097
 O
O
 NAG
O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:74 X:117 7.0 0.093 144.5 171.3 7.0 0.093 0.0 7B7
HOH
 4.489
0.853
 HA3
O
 NAB
O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:74 A:117 6.0 0.08 98.8 162.6 6.0 0.08 0.0 EA4
HOH
 5.554
3.700
 O
CA
 NAB
O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:74 A:117 6.0 0.08 99.7 165.0 6.0 0.08 0.0 EA4
HOH
 5.610
3.729
 O
CA
 NAB
O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:74 A:117 8.0 0.107 96.9 162.6 8.0 0.107 0.0 7I6
HOH
 5.626
3.754
 O
CA
 NAC
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:74 A:75 21.0 0.28 84.3 163.3 21.0 0.28 0.0 4ZZ
HOH
 5.192
2.885
 O
O
 C20
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:74 A:75 19.0 0.253 96.0 169.0 19.0 0.253 0.0 502
HOH
 5.123
3.260
 N
O
 N18
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 18.0 0.24 98.3 174.7 18.0 0.24 0.0 JUZ
HOH
 3.284
2.702
 O
O
 O33
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 16.0 0.213 87.8 162.2 16.0 0.213 0.0 JV2
HOH
 3.589
2.644
 O
O
 C26
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 16.0 0.213 89.7 158.0 16.0 0.213 0.0 JVH
HOH
 3.702
2.604
 O
O
 C16
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 15.0 0.2 81.9 164.2 15.0 0.2 0.0 JVN
JVN
HOH
 3.821
7.862
2.671
 O
N
O
 C10
F7
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 19.0 0.253 96.7 160.0 19.0 0.253 0.0 JVQ
HOH
 3.489
2.839
 O
O
 C15
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 18.0 0.24 97.5 163.8 18.0 0.24 0.0 JW2
HOH
 6.394
3.026
 N
O
 C16
O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:74 A:117 19.0 0.253 91.9 160.3 19.0 0.253 0.0 JVQ
PG4
HOH
 3.432
7.197
3.044
 O
C
O
 C15
O5
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 GLY A:75 X:75 15.0 0.2 92.6 160.5 15.0 0.2 0.0 C4Y
HOH
 5.354
3.032
 O
O
 N16
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 GLY A:75 A:75 7.0 0.093 98.7 157.4 7.0 0.093 0.0 HOH
 3.679
 O
 O
GLY B:75 B:75 7.0 0.093 104.2 148.1 NA NA NA
GLY C:75 C:75 9.0 0.12 100.5 160.3 NA NA NA
GLY D:75 D:75 9.0 0.12 100.9 159.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 GLY A:117 A:117 20.0 0.267 106.9 152.1