Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81111297 . C A CCDS7358.1:NM_005729.3:c.370Cgc>Agc_NP_005720.1:p.124R>S Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ARG A:82 X:82 98.0 0.436 -139.6 155.4 98.0 0.436 0.0 HOH
 2.598
 N
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 ARG A:82 X:82 148.0 0.658 -143.2 153.3 148.0 0.658 0.0 DMS
DMS
HOH
 9.891
2.981
2.551
 NH2
NE
NH1
 S
O
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ARG A:82 A:82 101.0 0.449 -139.4 159.4 101.0 0.449 0.0 HOH
 2.920
 NH2
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 ARG A:82 A:82 92.0 0.409 -147.9 161.0 92.0 0.409 0.0 HOH
 6.086
 N
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 ARG A:82 A:82 146.0 0.649 -152.4 163.2 146.0 0.649 0.0 HOH
 2.664
 O
 O
ARG B:82 B:82 160.0 0.711 -138.9 150.8 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 100.0 0.444 -139.4 157.2 100.0 0.444 0.0 Q8A
HOH
 3.088
3.033
 NH2
NE
 NAH
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 103.0 0.458 -138.4 158.3 103.0 0.458 0.0 HOH
 5.875
 N
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 92.0 0.409 -138.0 157.1 92.0 0.409 0.0 HOH
 3.026
 NE
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 101.0 0.449 -139.2 156.6 101.0 0.449 0.0 6AI
HOH
 3.277
3.089
 NH2
NE
 CAE
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 99.0 0.44 -140.1 155.3 99.0 0.44 0.0 HOH
 5.902
 N
 O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 102.0 0.453 -139.0 155.7 102.0 0.453 0.0 3AO
HOH
 2.867
3.027
 NH2
NE
 OAC
O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 94.0 0.418 -138.3 158.8 94.0 0.418 0.0 HOH
 5.935
 N
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 97.0 0.431 -139.2 159.1 97.0 0.431 0.0 HOH
 1.927
 HH21
 O
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 X:124 95.0 0.422 -141.3 155.8 95.0 0.422 0.0 HOH
 5.804
 N
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 X:124 148.0 0.658 -146.3 156.5 148.0 0.658 0.0 HOH
 6.019
 N
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 100.0 0.444 -139.6 155.7 100.0 0.444 0.0 HOH
 5.912
 N
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 X:124 96.0 0.427 -139.2 157.4 96.0 0.427 0.0 MSY
HOH
 7.675
3.024
 NH2
CZ
 CA5
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 X:124 100.0 0.444 -138.0 157.2 100.0 0.444 0.0 MIO
HOH
 3.144
2.875
 NH2
NE
 OAE
O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 95.0 0.422 -141.9 157.9 95.0 0.422 0.0 5MZ
HOH
 2.939
3.034
 NH2
NE
 NAI
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 ARG A:83 A:124 88.0 0.391 -138.8 159.9 88.0 0.391 0.0 EA4
HOH
 3.646
3.002
 NE
NE
 NAB
O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 ARG A:82 A:82 163.0 0.724 -135.0 152.6 163.0 0.724 0.0 HOH
 2.963
 O
 O
ARG B:82 B:82 173.0 0.769 -130.6 146.4 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:82 A:82 157.0 0.698 -144.4 158.4 157.0 0.698 0.0 4ZL
HOH
 5.675
2.757
 CD
O
 CAC
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:82 A:82 161.0 0.716 -154.9 157.3 161.0 0.716 0.0 4ZM
HOH
 2.955
2.832
 NE
NH1
 N2
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:82 A:82 154.0 0.684 -147.6 161.0 154.0 0.684 0.0 4ZP
HOH
 3.179
2.727
 NH1
NH1
 C12
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:82 A:82 159.0 0.707 -149.8 157.7 159.0 0.707 0.0 4ZO
HOH
 3.532
3.067
 CB
NE
 O4
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 ARG A:82 A:82 100.0 0.444 -142.4 154.7 100.0 0.444 0.0 HOH
 5.764
 N
 O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 ARG A:82 A:82 168.0 0.747 -146.3 155.9 168.0 0.747 0.0 HOH
 3.100
 NE
 O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 ARG A:82 A:82 163.0 0.724 -138.7 150.6 155.0 0.689 0.035 B:P30405:0.036
 HOH
 2.641
 NH1
 O
ARG B:82 B:82 163.0 0.724 -142.4 154.4 161.0 0.716 0.008 A:P30405:0.009
 HOH
 3.306
 NH2
 O
ARG C:82 C:82 160.0 0.711 -140.3 158.2 160.0 0.711 0.0 HOH
 2.254
 NH2
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 ARG A:81 A:124 151.0 0.671 -141.3 159.4 151.0 0.671 0.0 HOH
 6.035
 N
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 A:124 86.0 0.382 -139.2 159.8 86.0 0.382 0.0 53Z
HOH
 3.396
2.938
 NE
NE
 NAA
O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 A:124 97.0 0.431 -142.0 156.0 97.0 0.431 0.0 671
HOH
 3.495
2.709
 NE
NE
 NAA
O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 X:124 153.0 0.68 -139.1 157.6 153.0 0.68 0.0 HOH
 6.022
 N
 O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 A:124 85.0 0.378 -141.1 155.8 85.0 0.378 0.0 HOH
 6.782
 N
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 X:124 84.0 0.373 -144.6 158.9 84.0 0.373 0.0 7I6
HOH
 3.377
2.053
 HH21
HE
 CAK
O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 X:124 94.0 0.418 -139.5 157.3 94.0 0.418 0.0 HOH
 5.988
 N
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 ARG A:81 X:124 91.0 0.404 -141.2 156.8 91.0 0.404 0.0 HOH
 2.031
 H
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:81 A:124 93.0 0.413 -139.6 155.4 93.0 0.413 0.0 HOH
 6.766
 N
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:81 A:124 96.0 0.427 -141.0 159.2 96.0 0.427 0.0 HOH
 5.902
 N
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 ARG A:81 A:124 85.0 0.378 -142.1 159.0 85.0 0.378 0.0 7I6
HOH
 3.519
3.900
 NE
CG
 NAC
O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ARG A:81 A:82 155.0 0.689 -154.0 160.5 155.0 0.689 0.0 4ZZ
HOH
 4.294
3.842
 CB
NE
 N24
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 ARG A:81 A:82 153.0 0.68 -142.9 152.9 153.0 0.68 0.0 502
HOH
 5.728
2.718
 CD
O
 N18
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 160.0 0.711 -154.0 155.7 160.0 0.711 0.0 JUZ
HOH
 4.411
3.123
 CB
NE
 C28
O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 155.0 0.689 -158.8 155.8 155.0 0.689 0.0 JV2
HOH
 3.599
3.065
 NE
NH1
 O34
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 154.0 0.684 -159.6 156.0 154.0 0.684 0.0 JVH
HOH
 3.555
2.935
 NE
NH1
 O23
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 155.0 0.689 -163.9 158.0 155.0 0.689 0.0 JVN
JVN
HOH
 3.396
3.370
3.125
 NE
NH2
NH2
 O17
C8
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 162.0 0.72 -142.8 158.6 162.0 0.72 0.0 JVQ
HOH
 2.957
2.930
 NH2
NH2
 O18
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 147.0 0.653 -142.1 157.0 147.0 0.653 0.0 HOH
 2.484
 NH2
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 ARG A:81 A:124 160.0 0.711 -145.3 160.4 160.0 0.711 0.0 JVQ
PG4
HOH
 2.990
6.368
3.564
 NE
N
NE
 O18
O5
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 ARG A:82 X:82 158.0 0.702 -141.5 150.5 158.0 0.702 0.0 C4Y
HOH
 4.878
2.709
 CG
O
 N16
O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 ARG A:82 A:82 105.0 0.467 -133.5 157.7 91.0 0.404 0.063 E:None:0.062
 HOH
 3.595
 NH2
 O
ARG B:82 B:82 105.0 0.467 -132.9 157.3 NA NA NA
ARG C:82 C:82 103.0 0.458 -132.3 157.6 NA NA NA
ARG D:82 D:82 103.0 0.458 -132.4 159.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 ARG A:124 A:124 159.0 0.707 -144.3 156.4