Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81111337 . C A CCDS7358.1:NM_005729.3:c.410cCa>cAa_NP_005720.1:p.137P>Q Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 PRO A:95 X:95 88.0 0.607 T -59.2 141.3 88.0 0.607 0.0 HOH
 2.999
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 PRO A:95 X:95 84.0 0.579 T -56.7 140.1 84.0 0.579 0.0 HOH
 3.080
 O
 O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 PRO A:95 A:95 86.0 0.593 T -57.3 141.2 86.0 0.593 0.0 1PE
HOH
 3.038
2.847
 O
O
 C24
O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 PRO A:95 A:95 86.0 0.593 T -59.4 145.2 86.0 0.593 0.0 1PE
HOH
 3.047
3.709
 O
CB
 C24
O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 PRO A:95 A:95 87.0 0.6 T -57.4 144.4 87.0 0.6 0.0 HOH
 2.743
 O
 O
PRO B:95 B:95 72.0 0.497 T -55.8 142.7 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 84.0 0.579 T -56.0 138.5 84.0 0.579 0.0 Q8A
HOH
 3.906
2.994
 O
O
 CAF
O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 87.0 0.6 T -56.8 141.8 87.0 0.6 0.0 HOH
 2.854
 O
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 73.0 0.503 T -56.8 142.1 73.0 0.503 0.0 HOH
 2.791
 O
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 89.0 0.614 T -58.7 139.4 89.0 0.614 0.0 P33
HOH
 3.141
2.839
 O
O
 C12
O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 87.0 0.6 T -57.2 142.4 87.0 0.6 0.0 N3M
HOH
 2.672
3.464
 O
CB
 NAB
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 89.0 0.614 T -57.0 141.9 89.0 0.614 0.0 HOH
 2.709
 O
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 87.0 0.6 T -57.5 142.3 87.0 0.6 0.0 HOH
 2.785
 O
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 88.0 0.607 T -56.2 145.2 88.0 0.607 0.0 HOH
 2.336
 HB2
 H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 X:137 83.0 0.572 T -55.3 143.9 83.0 0.572 0.0 M3I
HOH
 2.870
2.903
 O
O
 NAB
O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 X:137 86.0 0.593 T -56.5 142.5 86.0 0.593 0.0 1FP
HOH
 9.857
2.778
 CG
O
 OAA
O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 87.0 0.6 T -58.2 137.0 87.0 0.6 0.0 P4C
HOH
 3.117
3.177
 O
O
 C11
O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 X:137 88.0 0.607 T -57.0 143.3 88.0 0.607 0.0 HOH
 2.729
 O
 O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 X:137 88.0 0.607 T -59.6 146.0 88.0 0.607 0.0 HOH
 2.818
 O
 O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 85.0 0.586 T -57.5 142.4 85.0 0.586 0.0 P4C
HOH
 3.037
2.885
 O
O
 C11
O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PRO A:96 A:137 86.0 0.593 T -59.9 140.0 86.0 0.593 0.0 HOH
 3.423
 O
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 PRO A:95 A:95 85.0 0.586 T -57.6 145.7 85.0 0.586 0.0 HOH
 2.758
 O
 O
PRO B:95 B:95 88.0 0.607 T -51.5 139.5 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PRO A:95 A:95 86.0 0.593 T -55.4 143.2 86.0 0.593 0.0 PG4
HOH
 3.019
3.647
 O
CB
 C4
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PRO A:95 A:95 84.0 0.579 T -58.7 145.0 84.0 0.579 0.0 PG4
HOH
 3.035
3.642
 O
CB
 C4
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PRO A:95 A:95 85.0 0.586 T -60.6 145.9 85.0 0.586 0.0 PG4
HOH
 3.017
3.554
 O
CB
 C4
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PRO A:95 A:95 85.0 0.586 T -60.2 141.7 85.0 0.586 0.0 PG4
HOH
 3.009
3.599
 O
CB
 C4
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PRO A:95 A:95 85.0 0.586 T -61.1 141.4 85.0 0.586 0.0 PG4
HOH
 3.115
3.580
 O
CB
 C4
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 PRO A:95 A:95 88.0 0.607 T -61.0 142.1 88.0 0.607 0.0 12P
HOH
 3.252
3.412
 O
O
 C24
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 PRO A:95 A:95 85.0 0.586 T -58.6 144.2 85.0 0.586 0.0 HOH
 2.939
 O
 O
PRO B:95 B:95 86.0 0.593 T -59.4 141.8 86.0 0.593 0.0 HOH
 2.773
 O
 O
PRO C:95 C:95 83.0 0.572 T -58.0 141.7 83.0 0.572 0.0 HOH
 2.805
 O
 O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 PRO A:94 A:137 85.0 0.586 T -60.5 141.6 85.0 0.586 0.0 HOH
 2.631
 O
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 A:137 86.0 0.593 T -57.6 143.4 86.0 0.593 0.0 HOH
 2.854
 O
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 A:137 85.0 0.586 T -59.2 144.3 85.0 0.586 0.0 HOH
 3.356
 O
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 X:137 85.0 0.586 T -55.5 142.1 85.0 0.586 0.0 DMS
HOH
 6.698
2.665
 O
O
 C1
O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 A:137 85.0 0.586 T -63.7 144.5 85.0 0.586 0.0 HOH
 3.887
 CB
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 X:137 87.0 0.6 T -57.5 142.5 87.0 0.6 0.0 HOH
 2.690
 O
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 X:137 86.0 0.593 T -58.1 143.7 86.0 0.593 0.0 HOH
 2.747
 O
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PRO A:94 X:137 87.0 0.6 T -57.3 144.1 87.0 0.6 0.0 HOH
 2.838
 O
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PRO A:94 A:137 84.0 0.579 T -54.2 142.4 84.0 0.579 0.0 HOH
 3.996
 CB
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PRO A:94 A:137 86.0 0.593 T -57.9 143.0 86.0 0.593 0.0 HOH
 3.762
 CB
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PRO A:94 A:137 89.0 0.614 T -59.5 142.3 89.0 0.614 0.0 HOH
 2.851
 O
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 PRO A:94 A:95 86.0 0.593 T -63.8 144.2 86.0 0.593 0.0 PG4
HOH
 2.887
3.610
 O
CB
 C4
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 PRO A:94 A:95 86.0 0.593 T -62.8 143.4 86.0 0.593 0.0 PG4
HOH
 2.900
3.631
 O
CB
 C4
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 85.0 0.586 T -61.5 147.2 85.0 0.586 0.0 HOH
 3.568
 CG
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 86.0 0.593 T -56.8 142.8 86.0 0.593 0.0 PG4
SO4
HOH
 3.008
9.346
3.361
 O
O
CG
 O2
O4
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 85.0 0.586 T -55.4 140.8 85.0 0.586 0.0 P6G
HOH
 3.026
3.400
 O
CG
 C6
O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 86.0 0.593 T -62.3 143.8 86.0 0.593 0.0 PG4
SO4
HOH
 3.099
9.125
3.371
 O
O
CB
 C4
O4
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 88.0 0.607 T -58.1 143.7 88.0 0.607 0.0 PG4
HOH
 3.107
3.421
 O
CD
 C2
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 89.0 0.614 T -59.1 142.3 89.0 0.614 0.0 HOH
 2.766
 O
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PRO A:94 A:137 87.0 0.6 T -55.1 141.5 87.0 0.6 0.0 HOH
 3.791
 CB
 O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 PRO A:95 X:95 74.0 0.51 T -60.0 145.3 74.0 0.51 0.0 HOH
 2.639
 O
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 PRO A:95 A:95 88.0 0.607 T -65.1 136.9 88.0 0.607 0.0 P6G
HOH
 2.440
3.402
 O
CB
 H142
O
PRO B:95 B:95 87.0 0.6 T -65.2 137.9 NA NA NA
PRO C:95 C:95 85.0 0.586 T -65.0 137.6 NA NA NA
PRO D:95 D:95 85.0 0.586 T -64.7 138.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 PRO A:137 A:137 81.0 0.559 T -57.4 145.3