Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81113533 . T A CCDS7358.1:NM_005729.3:c.559Ttc>Atc_NP_005720.1:p.187F>I Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 PHE A:145 X:145 20.0 0.095 T -99.4 11.9 20.0 0.095 0.0 HOH
 3.159
 CZ
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 PHE A:145 X:145 17.0 0.081 T -98.1 10.6 17.0 0.081 0.0 DMS
HOH
 9.605
3.163
 O
CZ
 O
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 PHE A:145 A:145 17.0 0.081 T -98.1 11.6 17.0 0.081 0.0 HOH
 3.023
 CE1
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 PHE A:145 A:145 48.0 0.229 T -93.6 5.4 48.0 0.229 0.0 HOH
 3.552
 O
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 PHE A:145 A:145 54.0 0.257 T -107.1 10.7 54.0 0.257 0.0 HOH
 3.217
 CE2
 O
PHE B:145 B:145 39.0 0.186 T -95.0 7.7 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 10.0 0.048 T -93.6 5.1 10.0 0.048 0.0 HOH
 3.200
 C
 O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 28.0 0.133 T -97.6 9.9 28.0 0.133 0.0 4SO
HOH
 3.954
3.277
 CZ
CE1
 CAH
O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 17.0 0.081 T -98.2 12.3 17.0 0.081 0.0 HOH
 3.108
 CE1
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 15.0 0.071 T -97.4 12.8 15.0 0.071 0.0 HOH
 3.179
 CZ
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 16.0 0.076 T -95.1 9.3 16.0 0.076 0.0 GOL
HOH
 9.663
3.209
 O
CZ
 O3
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 21.0 0.1 T -98.4 11.7 21.0 0.1 0.0 HOH
 3.163
 CE1
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 14.0 0.067 T -94.4 9.0 14.0 0.067 0.0 HOH
 3.253
 CZ
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 22.0 0.105 T -99.1 12.2 22.0 0.105 0.0 HOH
 2.349
 HA
 H1
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 X:187 28.0 0.133 T -96.4 8.1 28.0 0.133 0.0 HOH
 3.309
 CE1
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 X:187 32.0 0.152 T -94.3 9.3 32.0 0.152 0.0 HOH
 3.229
 C
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 13.0 0.062 T -95.0 10.2 13.0 0.062 0.0 HOH
 3.255
 CZ
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 X:187 20.0 0.095 T -97.1 11.2 20.0 0.095 0.0 PEG
HOH
 7.494
3.129
 N
CE1
 C4
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 X:187 27.0 0.129 T -94.2 8.9 27.0 0.129 0.0 HOH
 3.243
 CE1
 O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 19.0 0.09 T -99.6 13.3 19.0 0.09 0.0 HOH
 3.115
 CE1
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 PHE A:146 A:187 13.0 0.062 T -98.3 6.5 13.0 0.062 0.0 HOH
 3.221
 C
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 PHE A:145 A:145 39.0 0.186 T -95.4 5.8 39.0 0.186 0.0 HOH
 3.244
 C
 O
PHE B:145 B:145 25.0 0.119 T -83.9 -0.0 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PHE A:145 A:145 36.0 0.171 T -90.1 -0.7 36.0 0.171 0.0 HOH
 3.468
 C
 O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PHE A:145 A:145 35.0 0.167 T -94.7 2.5 35.0 0.167 0.0 4ZM
HOH
 7.295
3.420
 O
O
 C15
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PHE A:145 A:145 35.0 0.167 T -94.4 2.0 35.0 0.167 0.0 HOH
 3.407
 O
 O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PHE A:145 A:145 34.0 0.162 T -90.7 5.5 34.0 0.162 0.0 HOH
 3.467
 O
 O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 PHE A:145 A:145 35.0 0.167 T -92.3 -0.2 35.0 0.167 0.0 HOH
 3.274
 O
 O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 PHE A:145 A:145 32.0 0.152 T -95.3 5.3 32.0 0.152 0.0 EDO
PO4
HOH
 6.495
8.255
3.270
 CE1
C
C
 O1
O4
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 PHE A:145 A:145 34.0 0.162 T -97.3 9.5 34.0 0.162 0.0 EDO
CIT
EDO
HOH
 7.501
9.782
5.130
3.323
 CD1
O
O
CE1
 O1
O4
C1
O
PHE B:145 B:145 33.0 0.157 T -93.2 4.1 33.0 0.157 0.0 HOH
 3.214
 O
 O
PHE C:145 C:145 39.0 0.186 T -98.3 5.4 39.0 0.186 0.0 EDO
CIT
EDO
HOH
 5.171
9.871
7.510
3.085
 O
O
CD1
O
 C1
O7
O1
O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 PHE A:144 A:187 32.0 0.152 T -92.6 0.4 32.0 0.152 0.0 HOH
 6.522
 CD1
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 A:187 21.0 0.1 T -98.9 10.9 21.0 0.1 0.0 HOH
 3.049
 CE1
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 A:187 14.0 0.067 T -99.6 13.2 14.0 0.067 0.0 HOH
 3.111
 CZ
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 X:187 20.0 0.095 T -100.1 12.8 20.0 0.095 0.0 HOH
 3.460
 C
 O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 A:187 30.0 0.143 T -97.3 10.3 30.0 0.143 0.0 HOH
 6.594
 CZ
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 X:187 14.0 0.067 T -97.6 9.5 14.0 0.067 0.0 HOH
 2.585
 HZ
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 X:187 14.0 0.067 T -95.3 8.9 14.0 0.067 0.0 HOH
 3.349
 C
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 PHE A:144 X:187 17.0 0.081 T -98.1 13.3 17.0 0.081 0.0 HOH
 2.657
 HZ
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PHE A:144 A:187 33.0 0.157 T -93.3 7.7 33.0 0.157 0.0 HOH
 6.316
 N
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PHE A:144 A:187 31.0 0.148 T -94.4 2.9 31.0 0.148 0.0 HOH
 6.420
 N
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 PHE A:144 A:187 29.0 0.138 T -89.7 5.3 29.0 0.138 0.0 HOH
 6.502
 N
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 PHE A:144 A:145 34.0 0.162 T -96.8 1.9 34.0 0.162 0.0 HOH
 3.411
 C
 O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 PHE A:144 A:145 35.0 0.167 T -89.5 1.7 35.0 0.167 0.0 HOH
 3.437
 O
 O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 41.0 0.195 T -93.3 1.8 41.0 0.195 0.0 HOH
 3.368
 C
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 31.0 0.148 T -93.9 5.0 31.0 0.148 0.0 PO4
HOH
 8.169
3.228
 C
O
 O4
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 37.0 0.176 T -93.9 13.4 37.0 0.176 0.0 HOH
 3.350
 C
 O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 19.0 0.09 T -98.3 11.3 19.0 0.09 0.0 HOH
 4.040
 CD1
 O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 35.0 0.167 T -92.2 4.9 35.0 0.167 0.0 SO4
HOH
 8.224
3.405
 C
O
 O4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 19.0 0.09 T -96.7 14.2 19.0 0.09 0.0 HOH
 3.179
 CZ
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 PHE A:144 A:187 35.0 0.167 T -89.2 7.1 35.0 0.167 0.0 SO4
SO4
HOH
 7.906
9.639
6.908
 O
O
O
 O2
O2
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 PHE A:145 X:145 41.0 0.195 T -94.7 11.2 41.0 0.195 0.0 HOH
 4.164
 CD1
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 PHE A:145 A:145 33.0 0.157 T -96.1 6.5 33.0 0.157 0.0 SO4
HOH
 8.114
5.376
 O
CZ
 O2
O
PHE B:145 B:145 33.0 0.157 T -96.0 6.7 NA NA NA
PHE C:145 C:145 32.0 0.152 T -96.5 6.0 NA NA NA
PHE D:145 D:145 32.0 0.152 T -96.3 5.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 PHE A:187 A:187 28.0 0.133 T -90.2 -2.9