Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 81113537 . G A CCDS7358.1:NM_005729.3:c.563gGc>gAc_NP_005720.1:p.188G>D Homo sapiens peptidylprolyl isomerase F (PPIF), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2bit 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:146 X:146 14.0 0.187 -89.9 -171.0 14.0 0.187 0.0 HOH
 2.761
 O
 O
2biu 1 P30405 99.39 3e-120 X-RAY
 2005-01-26 GLY A:146 X:146 14.0 0.187 -93.8 -171.6 14.0 0.187 0.0 DMS
HOH
 9.046
2.839
 CA
O
 O
O
4o8h 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:146 A:146 14.0 0.187 -94.8 -168.1 14.0 0.187 0.0 HOH
 2.734
 O
 O
4o8i 1 P30405 99.39 3e-120 X-RAY
 2014-06-11 GLY A:146 A:146 18.0 0.24 -92.7 -171.2 18.0 0.24 0.0 HOH
 3.251
 O
 O
5a0e 1 P30405 99.39 3e-120 X-RAY
 2015-12-30 GLY A:146 A:146 20.0 0.267 -97.4 -165.0 20.0 0.267 0.0 HOH
 2.849
 O
 O
GLY B:146 B:146 16.0 0.213 -100.1 -167.9 NA NA NA
3r49 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 13.0 0.173 -85.7 -167.3 13.0 0.173 0.0 HOH
 2.704
 O
 O
3r4g 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 13.0 0.173 -93.2 -168.2 13.0 0.173 0.0 HOH
 2.748
 O
 O
3r54 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -94.4 -168.3 14.0 0.187 0.0 HOH
 2.741
 O
 O
3r56 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 13.0 0.173 -90.2 -170.8 13.0 0.173 0.0 HOH
 2.660
 O
 O
3r57 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -89.4 -173.5 14.0 0.187 0.0 GOL
HOH
 9.464
2.838
 C
O
 O3
O
3r59 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -91.3 -171.0 14.0 0.187 0.0 HOH
 2.778
 O
 O
3rcf 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -90.5 -169.8 14.0 0.187 0.0 HOH
 2.739
 O
 O
3rcg 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -93.6 -169.5 14.0 0.187 0.0 HOH
 2.639
 O
 H2
3rci 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 X:188 14.0 0.187 -89.1 -171.2 14.0 0.187 0.0 HOH
 2.773
 O
 O
3rck 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 X:188 14.0 0.187 -89.1 -171.5 14.0 0.187 0.0 HOH
 2.704
 O
 O
3rcl 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -90.4 -170.6 14.0 0.187 0.0 HOH
 2.719
 O
 O
3rd9 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 X:188 14.0 0.187 -90.9 -170.8 14.0 0.187 0.0 PEG
HOH
 4.889
2.759
 O
O
 O4
O
3rda 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 X:188 14.0 0.187 -92.9 -169.8 14.0 0.187 0.0 HOH
 2.743
 O
 O
3rdb 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 14.0 0.187 -93.7 -165.5 14.0 0.187 0.0 HOH
 2.677
 O
 O
3rdc 1 P30405 99.39 3e-120 X-RAY
 2012-03-21 GLY A:147 A:188 13.0 0.173 -87.0 -171.9 13.0 0.173 0.0 HOH
 2.735
 O
 O
2z6w 1 P30405 99.39 1e-119 X-RAY
 2008-04-29 GLY A:146 A:146 14.0 0.187 -97.5 -166.2 14.0 0.187 0.0 HOH
 2.869
 O
 O
GLY B:146 B:146 17.0 0.227 -91.4 -170.1 NA NA NA
5cbt 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:146 A:146 15.0 0.2 -85.7 -172.1 15.0 0.2 0.0 PGE
HOH
 9.916
2.821
 C
O
 C6
O
5cbu 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:146 A:146 15.0 0.2 -89.9 -168.2 15.0 0.2 0.0 PGE
4ZM
HOH
 9.822
9.134
2.828
 C
CA
O
 C6
C
O
5cbv 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:146 A:146 13.0 0.173 -86.1 -172.4 13.0 0.173 0.0 PGE
HOH
 9.805
2.841
 C
O
 C6
O
5cbw 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:146 A:146 13.0 0.173 -89.1 -168.1 13.0 0.173 0.0 PGE
HOH
 9.878
2.802
 C
O
 C6
O
5ccr 1 P30405 99.39 1e-119 X-RAY
 2016-07-20 GLY A:146 A:146 15.0 0.2 -83.5 -170.1 15.0 0.2 0.0 PGE
HOH
 9.841
2.845
 C
O
 C6
O
6y3e 1 P30405 99.39 1e-119 X-RAY
 2020-03-04 GLY A:146 A:146 17.0 0.227 -90.8 -172.6 17.0 0.227 0.0 PO4
HOH
 4.927
2.782
 O
O
 O4
O
6ybm 1 P30405 99.39 1e-119 X-RAY
 2020-04-15 GLY A:146 A:146 16.0 0.213 -92.2 -173.5 16.0 0.213 0.0 EDO
HOH
 5.002
2.755
 O
O
 C1
O
GLY B:146 B:146 17.0 0.227 -87.5 -172.9 17.0 0.227 0.0 HOH
 2.813
 O
 O
GLY C:146 C:146 16.0 0.213 -84.6 -174.2 16.0 0.213 0.0 EDO
HOH
 5.033
2.810
 O
O
 C1
O
3qyu 1 P30405 99.39 2e-119 X-RAY
 2011-08-24 GLY A:145 A:188 16.0 0.213 -83.6 -172.7 16.0 0.213 0.0 HOH
 7.690
 CA
 O
4j58 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 A:188 13.0 0.173 -93.3 -168.0 13.0 0.173 0.0 HOH
 2.763
 O
 O
4j59 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 A:188 13.0 0.173 -91.9 -170.2 13.0 0.173 0.0 HOH
 2.756
 O
 O
4j5a 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 X:188 15.0 0.2 -92.5 -166.4 15.0 0.2 0.0 HOH
 2.752
 O
 O
4j5b 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 A:188 17.0 0.227 -96.2 -177.4 17.0 0.227 0.0 HOH
 8.211
 CA
 O
4j5c 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 X:188 14.0 0.187 -94.0 -168.6 14.0 0.187 0.0 HOH
 2.831
 O
 O
4j5d 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 X:188 14.0 0.187 -92.3 -164.8 14.0 0.187 0.0 HOH
 2.660
 O
 O
4j5e 1 P30405 99.39 2e-119 X-RAY
 2014-02-19 GLY A:145 X:188 14.0 0.187 -96.9 -166.2 14.0 0.187 0.0 HOH
 2.723
 O
 O
4xnc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:145 A:188 17.0 0.227 -93.4 -173.5 17.0 0.227 0.0 HOH
 7.780
 N
 O
4zsc 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:145 A:188 16.0 0.213 -84.1 -175.8 16.0 0.213 0.0 HOH
 7.579
 CA
 O
4zsd 1 P30405 99.39 2e-119 X-RAY
 2015-08-12 GLY A:145 A:188 16.0 0.213 -89.0 -173.8 16.0 0.213 0.0 HOH
 5.254
 O
 O
5ccn 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:145 A:146 14.0 0.187 -78.6 -170.6 14.0 0.187 0.0 PGE
HOH
 9.835
2.834
 C
O
 C6
O
5ccq 1 P30405 99.39 2e-119 X-RAY
 2016-07-20 GLY A:145 A:146 15.0 0.2 -85.6 -167.9 15.0 0.2 0.0 PGE
HOH
 9.850
2.929
 C
O
 C6
O
6r8l 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 17.0 0.227 -92.3 -176.1 17.0 0.227 0.0 HOH
 2.799
 O
 O
6r8o 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 16.0 0.213 -88.2 -171.7 16.0 0.213 0.0 PO4
HOH
 4.895
3.006
 O
O
 O4
O
6r8w 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 15.0 0.2 -100.4 -166.8 15.0 0.2 0.0 HOH
 2.871
 O
 O
6r9s 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 16.0 0.213 -93.2 -176.2 16.0 0.213 0.0 1PE
HOH
 9.879
5.612
 C
O
 OH7
O
6r9u 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 15.0 0.2 -87.4 -171.7 15.0 0.2 0.0 SO4
HOH
 4.952
2.866
 O
O
 O4
O
6r9x 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 13.0 0.173 -95.5 -172.5 13.0 0.173 0.0 HOH
 2.733
 O
 O
6ra1 1 P30405 99.39 2e-119 X-RAY
 2019-11-27 GLY A:145 A:188 16.0 0.213 -89.4 -174.3 16.0 0.213 0.0 SO4
SO4
HOH
 4.837
9.067
6.587
 O
CA
C
 O2
O2
O
5ccs 1 P30405 98.78 3e-119 X-RAY
 2016-07-20 GLY A:146 X:146 16.0 0.213 -96.2 -171.9 16.0 0.213 0.0 HOH
 6.191
 C
 O
4tot 1 P29117 96.32 7e-116 X-RAY
 2014-11-12 GLY A:146 A:146 16.0 0.213 -93.0 -178.3 16.0 0.213 0.0 SO4
HOH
 5.067
7.692
 O
N
 O4
O
GLY B:146 B:146 15.0 0.2 -93.3 -178.3 NA NA NA
GLY C:146 C:146 16.0 0.213 -92.7 -179.1 NA NA NA
GLY D:146 D:146 16.0 0.213 -92.4 -178.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p30405-f1 1 P30405 100.0 5e-154 GLY A:188 A:188 18.0 0.24 -76.1 173.9