Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98080405 . G A CCDS7447.1:NM_004088.3:c.538Gag>Aag_NP_004079.3:p.180E>K Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 GLU A:51 A:180 105.0 0.553 H -63.9 -44.3 105.0 0.553 0.0 HOH
 2.702
 OE1
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLU A:51 A:180 88.0 0.463 H -69.2 -45.1 88.0 0.463 0.0 1FO
HOH
 6.687
2.987
 OE2
OE2
 OAD
O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLU A:51 A:180 95.0 0.5 H -70.2 -45.2 95.0 0.5 0.0 1FQ
HOH
 9.894
2.720
 OE1
OE2
 CAS
O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 97.0 0.511 H -65.5 -45.4 97.0 0.511 0.0 DA
2DT
D3T
HOH
 9.599
9.558
7.258
2.751
 OE2
OE1
OE1
O
 OP2
O4
O4
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 77.0 0.405 H -72.3 -48.3 77.0 0.405 0.0 DA
DA
DA
HOH
 9.390
8.189
7.806
2.904
 OE2
OE1
OE1
OE1
 OP2
N6
N6
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 112.0 0.589 H -67.8 -46.6 112.0 0.589 0.0 8BA
DA
DA
HOH
 9.211
8.443
7.637
3.288
 OE2
OE1
OE1
CG
 OP1
N6
N6
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 102.0 0.537 H -68.7 -45.1 102.0 0.537 0.0 DA
HOH
 9.542
3.431
 OE2
CG
 OP2
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 96.0 0.505 H -68.2 -46.0 96.0 0.505 0.0 DA
HOH
 9.289
2.947
 OE2
OE1
 OP2
O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 96.0 0.505 H -69.2 -45.3 96.0 0.505 0.0 DA
HOH
 9.966
3.164
 OE2
OE1
 O3'
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 84.0 0.442 H -67.5 -47.5 84.0 0.442 0.0 HOH
 3.613
 OE1
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 73.0 0.384 H -68.4 -44.4 73.0 0.384 0.0 DA
HOH
 9.484
4.001
 OE2
CG
 OP2
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 103.0 0.542 H -68.3 -46.4 103.0 0.542 0.0 DA
DA
HOH
 9.104
7.738
2.638
 OE2
OE1
OE2
 OP2
N6
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 112.0 0.589 H -70.5 -45.2 112.0 0.589 0.0 DA
HOH
 9.367
3.521
 OE2
CG
 OP2
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 116.0 0.611 H -69.3 -45.5 116.0 0.611 0.0 DA
NA
HOH
 9.203
9.866
3.473
 OE2
OE2
CG
 OP2
NA
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 94.0 0.495 T -65.5 -46.5 94.0 0.495 0.0 ZN
ZN
HOH
 5.045
7.263
2.964
 CB
N
OE2
 ZN
ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:70 A:180 95.0 0.5 H -66.7 -46.5 95.0 0.5 0.0 HOH
 5.351
 CG
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 93.0 0.489 H -67.8 -44.7 93.0 0.489 0.0 DG
DG
DA
DC
DCT
HOH
 8.370
8.933
9.157
9.096
8.553
7.999
 OE1
OE1
OE2
OE1
OE1
OE1
 O6
O6
OP2
N4
N4
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 62.0 0.326 H -67.5 -44.1 62.0 0.326 0.0 DG
DA
DA
DC
NA
DCT
HOH
 8.019
9.562
9.107
8.514
9.986
7.961
2.683
 OE1
OE1
OE2
OE1
OE2
OE1
O
 O6
N6
OP2
N4
NA
N4
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 62.0 0.326 H -67.0 -43.1 62.0 0.326 0.0 DG
DA
DC
DCT
HOH
 7.748
9.508
8.631
7.781
5.779
 OE1
OE2
OE1
OE1
OE2
 O6
OP2
N4
N4
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 63.0 0.332 H -68.7 -43.5 63.0 0.332 0.0 DG
DT
DA
DC
DCT
HOH
 7.735
9.320
9.413
8.504
7.680
2.717
 OE1
OE1
OE2
OE1
OE1
O
 O6
O4
OP2
N4
N4
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:70 A:180 74.0 0.389 H -61.7 -53.6 74.0 0.389 0.0 DT
DT
DC
DG
NA
ACT
HOH
 8.996
8.472
9.670
9.969
9.226
8.287
3.174
 OE2
OE2
OE1
OE1
OE2
N
OE1
 OP2
OP2
N4
O6
NA
OXT
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:70 A:180 60.0 0.316 H -65.1 -47.7 60.0 0.316 0.0 DG
DG
DC
DG
DC
NA
ACT
HOH
 9.084
9.348
8.416
8.515
9.071
9.766
8.126
2.706
 OE2
OE1
OE1
OE1
OE1
OE2
N
O
 OP2
O6
N4
O6
N4
NA
OXT
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:70 A:180 53.0 NA H -72.5 -33.6 53.0 NA NA DC
SO4
HOH
 9.851
5.835
6.738
 CG
CG
CG
 N4
O1
O
GLU B:70 B:180 47.0 NA H -72.6 -33.7 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLU A:51 A:180 102.0 0.537 H -70.3 -45.0 102.0 0.537 0.0 DC
1FQ
HOH
 9.295
9.764
3.665
 OE1
OE2
OE2
 OP2
CAR
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLU A:51 A:180 106.0 0.558 H -67.8 -46.2 106.0 0.558 0.0 DC
1FO
HOH
 9.748
7.221
2.767
 OE1
OE2
OE2
 OP2
OAD
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 81.0 0.426 H -69.0 -43.6 81.0 0.426 0.0 DG
DG
DA
DC
DCT
HOH
 7.955
9.218
8.777
8.227
8.197
7.100
 OE1
OE1
OE1
OE1
OE1
N
 O6
O6
C2
N4
N4
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 33.0 NA H -67.3 -44.3 33.0 NA NA HOH
 8.131
 O
 O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 61.0 0.321 H -66.5 -45.6 61.0 0.321 0.0 DG
DA
DA
DC
NA
DCT
HOH
 8.907
9.993
8.812
8.393
9.599
8.457
6.071
 OE1
OE2
OE2
OE1
OE2
OE1
OE1
 O6
OP2
OP2
N4
NA
N4
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 63.0 0.332 H -67.2 -44.7 63.0 0.332 0.0 DG
DA
DA
DCT
HOH
 8.081
8.262
9.321
8.451
3.705
 OE1
OE1
OE2
OE1
CG
 O6
N6
OP2
N4
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 33.0 NA H -67.3 -45.0 33.0 NA NA DC
HOH
 8.978
9.095
 CB
O
 N3
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 106.0 0.558 H -68.1 -45.6 106.0 0.558 0.0 DG
DA
DA
NA
DCT
HOH
 8.758
9.557
8.750
9.599
8.828
3.664
 OE1
OE2
OE2
OE2
OE1
OE2
 O6
OP2
OP2
NA
N4
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:70 A:180 68.0 0.358 H -67.9 -45.6 68.0 0.358 0.0 DG
DG
DA
DC
HOH
 7.310
8.146
7.844
7.486
5.303
 OE1
OE1
OE1
OE1
OE2
 O6
O6
N6
N4
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 GLU B:33 A:180 99.0 0.521 H -77.4 -33.2 99.0 0.521 0.0 BRU
BRU
 9.971
8.130
 OE1
OE2
 OP2
BR
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 GLU A:33 A:180 97.0 0.511 H -74.2 -33.2 97.0 0.511 0.0 NA
HOH
 9.838
8.049
 OE2
N
 NA
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 GLU A:180 A:180 71.0 0.374 H -61.9 -44.3