Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98082430 . G A CCDS7447.1:NM_004088.3:c.695gGa>gAa_NP_004079.3:p.232G>E Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 GLY A:103 A:232 29.0 0.387 S 97.3 -2.4 29.0 0.387 0.0 HOH
 5.259
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLY A:103 A:232 34.0 0.453 S 74.4 3.9 34.0 0.453 0.0 HOH
 6.122
 O
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLY A:103 A:232 39.0 0.52 S 74.9 -0.6 39.0 0.52 0.0 HOH
 5.479
 O
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 35.0 0.467 S 80.3 3.3 35.0 0.467 0.0 HOH
 6.504
 C
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 37.0 0.493 S 78.0 5.6 37.0 0.493 0.0 HOH
 5.188
 N
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 32.0 0.427 S 73.6 4.6 32.0 0.427 0.0 HOH
 4.922
 O
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 33.0 0.44 S 74.6 3.8 33.0 0.44 0.0 HOH
 2.753
 O
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 33.0 0.44 S 77.1 2.3 33.0 0.44 0.0 HOH
 5.647
 O
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 35.0 0.467 S 75.5 5.6 35.0 0.467 0.0 HOH
 3.474
 CA
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 35.0 0.467 S 69.6 8.3 35.0 0.467 0.0 HOH
 4.647
 O
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 34.0 0.453 S 75.4 5.6 34.0 0.453 0.0 HOH
 4.418
 O
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 35.0 0.467 S 72.6 4.2 35.0 0.467 0.0 HOH
 3.067
 O
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 34.0 0.453 S 74.5 5.3 34.0 0.453 0.0 HOH
 5.533
 O
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 35.0 0.467 S 72.0 4.6 35.0 0.467 0.0 HOH
 4.770
 O
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 32.0 0.427 S 79.8 5.3 32.0 0.427 0.0 HOH
 8.054
 O
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLY A:122 A:232 39.0 0.52 S 72.5 6.6 39.0 0.52 0.0 HOH
 5.182
 O
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 39.0 0.52 S 74.1 5.2 39.0 0.52 0.0 HOH
 3.873
 CA
 O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 33.0 0.44 S 74.6 3.3 33.0 0.44 0.0 HOH
 2.813
 O
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 33.0 0.44 S 74.4 4.6 33.0 0.44 0.0 HOH
 2.973
 O
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 32.0 0.427 S 75.5 3.6 32.0 0.427 0.0 HOH
 7.106
 C
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:122 A:232 60.0 0.8 S 86.0 16.2 60.0 0.8 0.0 HOH
 5.262
 N
 O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:122 A:232 38.0 0.507 S 84.3 15.9 38.0 0.507 0.0 HOH
 3.683
 O
 O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLY A:122 A:232 55.0 0.733 S 83.4 2.0 55.0 0.733 0.0 HOH
 6.742
 N
 O
GLY B:122 B:232 57.0 0.76 S 83.9 1.4 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLY A:103 A:232 38.0 0.507 S 82.2 2.2 38.0 0.507 0.0 HOH
 5.473
 O
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLY A:103 A:232 36.0 0.48 S 76.1 2.7 36.0 0.48 0.0 HOH
 5.626
 O
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 35.0 0.467 S 79.1 4.8 35.0 0.467 0.0 HOH
 3.293
 O
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 35.0 0.467 S 74.2 4.7 35.0 0.467 0.0
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 37.0 0.493 S 76.0 3.3 37.0 0.493 0.0 HOH
 5.732
 O
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 38.0 0.507 S 75.3 4.7 38.0 0.507 0.0 HOH
 8.499
 CA
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 38.0 0.507 S 75.6 4.1 38.0 0.507 0.0 HOH
 5.307
 O
 O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 38.0 0.507 S 76.4 3.7 38.0 0.507 0.0 HOH
 6.072
 O
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLY A:122 A:232 60.0 0.8 S 75.1 3.3 60.0 0.8 0.0
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 GLY B:85 A:232 35.0 0.467 S 91.9 -15.7 35.0 0.467 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 GLY A:85 A:232 40.0 0.533 S 123.9 -21.9 40.0 0.533 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 GLY A:232 A:232 46.0 0.613 S 80.9 2.7