Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98084077 . A C CCDS7447.1:NM_004088.3:c.805Atg>Ctg_NP_004079.3:p.269M>L Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 MET A:140 A:269 94.0 0.508 T -95.9 -7.0 94.0 0.508 0.0 HOH
 3.141
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 MET A:140 A:269 111.0 0.6 T -86.1 -10.7 111.0 0.6 0.0 HOH
 7.912
 O
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 MET A:140 A:269 92.0 0.497 T -86.3 -9.6 92.0 0.497 0.0 HOH
 5.078
 SD
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 98.0 0.53 T -84.5 -9.7 98.0 0.53 0.0 HOH
 2.649
 O
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 105.0 0.568 T -84.2 -9.3 105.0 0.568 0.0 HOH
 2.719
 O
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 108.0 0.584 T -84.1 -10.7 108.0 0.584 0.0 HOH
 2.728
 O
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 105.0 0.568 T -84.7 -10.4 105.0 0.568 0.0 HOH
 3.321
 CE
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 106.0 0.573 T -83.3 -9.5 106.0 0.573 0.0 HOH
 2.738
 O
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 106.0 0.573 T -84.4 -9.0 106.0 0.573 0.0 HOH
 3.551
 CE
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 104.0 0.562 T -85.8 -9.2 104.0 0.562 0.0 HOH
 2.601
 O
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 107.0 0.578 T -84.8 -10.3 107.0 0.578 0.0 HOH
 2.704
 O
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 105.0 0.568 T -83.6 -10.7 105.0 0.568 0.0 HOH
 2.647
 O
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 105.0 0.568 T -86.6 -9.6 105.0 0.568 0.0 HOH
 4.122
 CA
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 114.0 0.616 T -85.5 -10.2 114.0 0.616 0.0 HOH
 2.685
 O
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 99.0 0.535 T -89.6 -9.8 99.0 0.535 0.0 HOH
 3.522
 CG
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 MET A:159 A:269 106.0 0.573 T -83.7 -11.8 106.0 0.573 0.0 HOH
 3.401
 CE
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:159 A:269 113.0 0.611 T -82.4 -10.8 113.0 0.611 0.0 HOH
 7.795
 SD
 O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:159 A:269 97.0 0.524 T -84.1 -11.7 97.0 0.524 0.0 HOH
 4.979
 N
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:159 A:269 98.0 0.53 T -81.7 -13.1 98.0 0.53 0.0 HOH
 2.967
 O
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 MET A:159 A:269 98.0 0.53 T -82.0 -12.1 98.0 0.53 0.0 HOH
 5.902
 SD
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:159 A:269 108.0 0.584 T -68.6 -19.2 108.0 0.584 0.0 HOH
 7.419
 CE
 O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:159 A:269 101.0 0.546 T -81.7 -3.7 101.0 0.546 0.0 HOH
 3.397
 CE
 O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 MET A:159 A:269 95.0 0.514 T -83.6 3.8 95.0 0.514 0.0 HOH
 7.767
 O
 O
MET B:159 B:269 123.0 0.665 T -82.7 3.6 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 MET A:140 A:269 104.0 0.562 T -87.8 -9.4 104.0 0.562 0.0 HOH
 5.362
 CE
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 MET A:140 A:269 88.0 0.476 T -87.8 -9.8 88.0 0.476 0.0 HOH
 4.159
 CA
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 114.0 0.616 T -82.3 -11.5 114.0 0.616 0.0 HOH
 3.158
 CE
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 101.0 0.546 T -83.9 -10.7 101.0 0.546 0.0 HOH
 7.755
 O
 O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 106.0 0.573 T -85.4 -10.5 106.0 0.573 0.0 HOH
 6.026
 SD
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 99.0 0.535 T -84.9 -11.8 99.0 0.535 0.0 HOH
 6.597
 N
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 101.0 0.546 T -85.1 -8.4 101.0 0.546 0.0 HOH
 6.106
 C
 O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 100.0 0.541 T -80.1 -13.4 100.0 0.541 0.0 HOH
 4.261
 CE
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 MET A:159 A:269 106.0 0.573 T -85.8 -10.8 106.0 0.573 0.0 HOH
 5.801
 SD
 O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 MET B:122 A:269 98.0 0.53 T -78.8 -1.6 98.0 0.53 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 MET A:122 A:269 106.0 0.573 H -71.9 -21.7 106.0 0.573 0.0 HOH
 9.850
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 MET A:269 A:269 88.0 0.476 T -74.7 -2.0