Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98084108 . C A CCDS7447.1:NM_004088.3:c.836tCg>tAg_NP_004079.3:p.279S>* Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 SER A:150 A:279 58.0 0.504 H -83.4 -20.3 58.0 0.504 0.0 HOH
 3.703
 OG
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 SER A:150 A:279 62.0 0.539 H -91.7 -5.6 62.0 0.539 0.0 HOH
 3.356
 OG
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 SER A:150 A:279 63.0 0.548 H -83.4 -7.5 63.0 0.548 0.0 HOH
 3.728
 CA
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 83.0 0.722 H -90.6 -5.9 83.0 0.722 0.0 HOH
 2.704
 OG
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 72.0 0.626 T -93.2 -3.1 72.0 0.626 0.0 HOH
 2.604
 OG
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 71.0 0.617 T -90.9 -5.2 71.0 0.617 0.0 HOH
 2.603
 OG
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 73.0 0.635 H -90.8 -4.8 73.0 0.635 0.0 HOH
 2.711
 OG
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 66.0 0.574 T -88.7 -3.8 66.0 0.574 0.0 HOH
 2.607
 OG
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 72.0 0.626 H -88.5 -7.8 72.0 0.626 0.0 HOH
 2.667
 OG
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 70.0 0.609 H -88.6 -7.0 70.0 0.609 0.0 HOH
 2.723
 OG
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 71.0 0.617 H -90.5 -6.8 71.0 0.617 0.0 HOH
 2.596
 OG
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 70.0 0.609 T -88.7 -2.0 70.0 0.609 0.0 HOH
 2.616
 OG
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 70.0 0.609 H -89.2 -4.5 70.0 0.609 0.0 HOH
 3.515
 OG
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 84.0 0.73 T -91.9 -2.2 84.0 0.73 0.0 HOH
 6.436
 N
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 96.0 0.835 T -89.8 -8.1 96.0 0.835 0.0 HOH
 3.592
 O
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 SER A:169 A:279 67.0 0.583 H -87.5 -10.7 67.0 0.583 0.0 HOH
 4.752
 N
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 SER A:169 A:279 89.0 0.774 T -89.8 -4.2 89.0 0.774 0.0
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 SER A:169 A:279 71.0 0.617 H -88.5 -10.2 71.0 0.617 0.0 HOH
 2.782
 O
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 SER A:169 A:279 89.0 0.774 H -88.1 -9.4 89.0 0.774 0.0 HOH
 4.249
 OG
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 SER A:169 A:279 88.0 0.765 H -89.2 -9.5 88.0 0.765 0.0 HOH
 3.461
 CB
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 SER A:169 A:279 102.0 0.887 T -86.4 27.9 102.0 0.887 0.0 HOH
 3.424
 O
 O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 SER A:169 A:279 84.0 0.73 H -80.1 -9.0 84.0 0.73 0.0 HOH
 2.700
 OG
 O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 SER A:169 A:279 91.0 0.791 H -69.3 -34.8 91.0 0.791 0.0 HOH
 8.760
 N
 O
SER B:169 B:279 92.0 0.8 H -70.4 -33.6 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 SER A:150 A:279 62.0 0.539 H -87.9 -3.9 62.0 0.539 0.0 HOH
 3.532
 OG
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 SER A:150 A:279 68.0 0.591 H -88.3 -7.9 68.0 0.591 0.0 HOH
 3.766
 OG
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 88.0 0.765 H -89.9 -4.8 88.0 0.765 0.0 HOH
 3.956
 CB
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 92.0 0.8 H -90.1 -5.8 92.0 0.8 0.0 HOH
 8.395
 OG
 O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 95.0 0.826 H -90.4 -5.9 95.0 0.826 0.0 HOH
 8.405
 OG
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 89.0 0.774 H -89.2 -5.9 89.0 0.774 0.0 HOH
 4.722
 CB
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 96.0 0.835 H -88.5 -6.1 96.0 0.835 0.0
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 90.0 0.783 H -90.6 -6.2 90.0 0.783 0.0 HOH
 8.827
 OG
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 SER A:169 A:279 96.0 0.835 H -88.8 -4.3 96.0 0.835 0.0 HOH
 8.513
 OG
 O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 SER B:132 A:279 61.0 0.53 H -66.3 -37.3 61.0 0.53 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 SER A:132 A:279 56.0 0.487 S -60.2 -52.5 56.0 0.487 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 SER A:279 A:279 84.0 0.73 H -81.9 -13.6