Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98084110 | . | G | A | CCDS7447.1:NM_004088.3:c.838Gac>Aac_NP_004079.3:p.280D>N | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | ASP | A:151 | A:280 | 52.0 | 0.347 | -55.2 | 117.2 | 52.0 | 0.347 | 0.0 |
HOH |
2.977 |
OD2 |
O |
|||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:151 | A:280 | 55.0 | 0.367 | -66.9 | 135.2 | 55.0 | 0.367 | 0.0 |
HOH |
3.586 |
O |
O |
|||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:151 | A:280 | 53.0 | 0.353 | -65.5 | 132.5 | 53.0 | 0.353 | 0.0 |
HOH |
3.109 |
OD1 |
O |
|||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 52.0 | 0.347 | -67.0 | 135.7 | 52.0 | 0.347 | 0.0 |
HOH |
2.895 |
O |
O |
|||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 55.0 | 0.367 | -69.2 | 136.5 | 55.0 | 0.367 | 0.0 |
HOH |
2.667 |
O |
O |
|||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 55.0 | 0.367 | -67.5 | 136.4 | 55.0 | 0.367 | 0.0 |
HOH |
2.649 |
O |
O |
|||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 55.0 | 0.367 | -65.6 | 134.6 | 55.0 | 0.367 | 0.0 |
HOH |
2.676 |
O |
O |
|||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 54.0 | 0.36 | -68.4 | 137.0 | 54.0 | 0.36 | 0.0 |
HOH |
2.687 |
OD1 |
O |
|||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 54.0 | 0.36 | -64.0 | 134.1 | 54.0 | 0.36 | 0.0 |
HOH |
2.535 |
O |
O |
|||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 53.0 | 0.353 | -64.8 | 133.5 | 53.0 | 0.353 | 0.0 |
HOH |
2.455 |
O |
O |
|||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 54.0 | 0.36 | -64.4 | 133.0 | 54.0 | 0.36 | 0.0 |
HOH |
2.700 |
O |
O |
|||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 51.0 | 0.34 | -70.3 | 134.5 | 51.0 | 0.34 | 0.0 |
HOH |
2.728 |
OD1 |
O |
|||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 53.0 | 0.353 | -67.5 | 135.2 | 53.0 | 0.353 | 0.0 |
HOH |
3.482 |
O |
O |
|||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 56.0 | 0.373 | -67.6 | 135.9 | 56.0 | 0.373 | 0.0 |
HOH |
4.000 |
OD1 |
O |
|||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 51.0 | 0.34 | -66.4 | 135.8 | 51.0 | 0.34 | 0.0 |
HOH |
4.613 |
C |
O |
|||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:170 | A:280 | 55.0 | 0.367 | -63.5 | 134.9 | 55.0 | 0.367 | 0.0 |
HOH |
5.924 |
O |
O |
|||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 49.0 | 0.327 | -68.0 | 132.3 | 49.0 | 0.327 | 0.0 | |||||||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 51.0 | 0.34 | -62.0 | 135.7 | 51.0 | 0.34 | 0.0 |
HOH |
3.670 |
OD2 |
O |
|||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 53.0 | 0.353 | -63.0 | 135.3 | 53.0 | 0.353 | 0.0 |
HOH |
3.556 |
OD2 |
O |
|||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 52.0 | 0.347 | -61.9 | 135.0 | 52.0 | 0.347 | 0.0 |
HOH |
3.620 |
OD2 |
O |
|||
| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:170 | A:280 | 50.0 | 0.333 | -112.2 | 133.1 | 50.0 | 0.333 | 0.0 |
HOH |
4.534 |
N |
O |
|||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:170 | A:280 | 52.0 | 0.347 | -70.8 | 110.8 | 52.0 | 0.347 | 0.0 |
HOH |
3.576 |
OD2 |
O |
|||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:170 | A:280 | 54.0 | 0.36 | -52.3 | 116.7 | 54.0 | 0.36 | 0.0 |
HOH |
7.706 |
O |
O |
|||
| ASP | B:170 | B:280 | 26.0 | NA | -52.6 | 113.6 | NA | NA | NA | ||||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:151 | A:280 | 54.0 | 0.36 | -67.2 | 132.7 | 54.0 | 0.36 | 0.0 |
HOH |
3.870 |
N |
O |
|||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:151 | A:280 | 54.0 | 0.36 | -64.4 | 133.8 | 54.0 | 0.36 | 0.0 |
HOH |
3.224 |
O |
O |
|||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 51.0 | 0.34 | -66.9 | 134.1 | 51.0 | 0.34 | 0.0 |
HOH |
5.428 |
OD1 |
O |
|||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 52.0 | 0.347 | -67.0 | 132.9 | 52.0 | 0.347 | 0.0 |
HOH |
8.458 |
OD2 |
O |
|||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 58.0 | 0.387 | -64.3 | 137.6 | 58.0 | 0.387 | 0.0 |
HOH |
7.359 |
O |
O |
|||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 55.0 | 0.367 | -65.7 | 135.7 | 55.0 | 0.367 | 0.0 |
HOH |
6.444 |
C |
O |
|||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 50.0 | 0.333 | -66.5 | 131.9 | 50.0 | 0.333 | 0.0 |
HOH |
7.504 |
O |
O |
|||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 54.0 | 0.36 | -66.1 | 135.8 | 54.0 | 0.36 | 0.0 |
HOH |
6.299 |
OD1 |
O |
|||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:170 | A:280 | 55.0 | 0.367 | -68.4 | 134.3 | 55.0 | 0.367 | 0.0 |
HOH |
7.926 |
OD1 |
O |
|||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | ASP | B:133 | A:280 | 47.0 | 0.313 | -43.1 | 107.8 | 47.0 | 0.313 | 0.0 | |||||||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | ASP | A:133 | A:280 | 46.0 | 0.307 | S | -42.7 | 107.9 | 46.0 | 0.307 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | ASP | A:280 | A:280 | 48.0 | 0.32 | -73.3 | 120.2 | ||