Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98084132 . G A CCDS7447.1:NM_004088.3:c.860cGa>cAa_NP_004079.3:p.287R>Q Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 GLN A:158 A:287 138.0 0.767 H -56.9 -39.4 138.0 0.767 0.0 HOH
 3.101
 N
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLN A:158 A:287 133.0 0.739 H -60.4 -35.1 133.0 0.739 0.0 HOH
 3.607
 N
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLN A:158 A:287 134.0 0.744 H -58.4 -35.9 134.0 0.744 0.0 HOH
 3.025
 N
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 135.0 0.75 H -64.0 -31.0 135.0 0.75 0.0 DA
DA
DA
DA
HOH
 9.799
8.956
9.603
9.938
3.318
 N
N
N
C
N
 N6
C2
C4'
C5'
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 133.0 0.739 H -60.6 -34.2 133.0 0.739 0.0 DA
DA
HOH
 9.499
9.772
2.676
 C
C
O
 C4'
C5'
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 133.0 0.739 H -58.9 -35.6 133.0 0.739 0.0 DA
8BA
HOH
 9.671
9.872
2.722
 N
C
O
 C4'
C5'
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 136.0 0.756 H -59.8 -35.9 136.0 0.756 0.0 DA
DA
BRU
DA
HOH
 9.644
9.454
9.614
9.848
2.899
 N
N
C
C
N
 C2
C2
C4'
C5'
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 135.0 0.75 H -61.9 -35.7 135.0 0.75 0.0 HOH
 2.794
 O
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 134.0 0.744 H -62.1 -35.6 134.0 0.744 0.0 DA
DA
HOH
 9.638
9.146
2.856
 C
C
OE1
 O4'
OP1
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 133.0 0.739 H -59.6 -34.1 133.0 0.739 0.0 HOH
 3.037
 N
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 135.0 0.75 H -61.1 -36.1 135.0 0.75 0.0 DA
DA
HOH
 9.865
9.873
2.995
 N
C
O
 O4'
C5'
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 134.0 0.744 H -60.8 -36.4 134.0 0.744 0.0 DA
DA
HOH
 9.544
9.660
2.941
 C
C
N
 C4'
C5'
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 132.0 0.733 H -60.6 -34.8 132.0 0.733 0.0 DA
DA
HOH
 9.529
9.893
2.946
 C
C
N
 C4'
C5'
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 136.0 0.756 H -60.1 -35.4 136.0 0.756 0.0 DA
HOH
 9.788
3.167
 N
N
 O4'
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 132.0 0.733 H -61.4 -31.7 132.0 0.733 0.0 HOH
 3.583
 N
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLN A:177 A:287 130.0 0.722 H -60.8 -34.9 130.0 0.722 0.0 HOH
 2.886
 O
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 79.0 NA H -60.0 -36.1 79.0 NA NA DA
DA
DA
HOH
 9.787
9.726
9.895
3.438
 N
N
C
CB
 C8
O4'
C5'
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 131.0 0.728 H -57.1 -37.4 131.0 0.728 0.0 DA
DA
DA
HOH
 9.957
9.466
9.689
2.695
 N
N
C
OE1
 C8
C4'
C5'
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 131.0 0.728 H -56.7 -38.7 131.0 0.728 0.0 DA
DA
DA
DA
DA
DCT
HOH
 9.862
9.818
9.617
9.522
9.575
3.129
2.853
 N
N
N
N
C
NE2
O
 N6
N1
C2
C4'
C5'
O2G
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 132.0 0.733 H -58.2 -37.9 132.0 0.733 0.0 DA
DA
DA
HOH
 9.447
9.508
9.725
2.700
 N
N
C
O
 N6
C4'
C5'
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLN A:177 A:287 151.0 0.839 H -62.8 -25.3 151.0 0.839 0.0 DA
DA
DA
DC
DT
DT
HOH
 8.317
4.812
3.161
8.750
9.590
9.540
4.042
 CB
N
N
NE2
N
C
CG
 O3'
O3'
OP1
OP1
C4'
C5'
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLN A:177 A:287 125.0 0.694 H -60.7 -36.4 125.0 0.694 0.0 DA
DA
DA
DA
DT
DG
HOH
 8.111
4.471
2.742
7.570
9.612
9.390
2.817
 CB
N
N
N
N
C
O
 O3'
O3'
OP1
OP1
C4'
C5'
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLN A:177 A:287 139.0 0.772 H -57.1 -29.0 139.0 0.772 0.0 DA
DA
DA
HOH
 9.961
9.765
9.947
3.370
 N
N
C
N
 N1
C4'
C5'
O
GLN B:177 B:287 108.0 NA H -57.0 -29.5 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLN A:158 A:287 134.0 0.744 H -61.8 -33.2 134.0 0.744 0.0 DC
HOH
 9.847
3.561
 N
N
 C4'
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLN A:158 A:287 132.0 0.733 H -61.8 -34.6 132.0 0.733 0.0 DC
HOH
 9.970
4.632
 N
CB
 C4'
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 165.0 0.917 H -60.0 -34.7 165.0 0.917 0.0 DA
DA
HOH
 9.813
9.877
3.284
 C
C
N
 C4'
OP1
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 169.0 0.939 H -58.5 -35.9 169.0 0.939 0.0 DA
DA
HOH
 9.898
9.477
3.404
 N
C
CB
 N1
C4'
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 139.0 0.772 H -58.8 -36.2 139.0 0.772 0.0 DA
DA
DA
DA
HOH
 9.963
9.483
9.437
9.775
3.199
 N
N
C
C
N
 C2
C2
C4'
C5'
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 80.0 NA H -58.9 -36.6 80.0 NA NA DA
DA
DA
DA
HOH
 9.458
9.507
9.609
9.915
3.413
 N
N
N
C
CA
 C2
C2
C4'
C5'
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 134.0 0.744 H -57.0 -36.7 134.0 0.744 0.0 DA
DA
DA
DA
HOH
 9.286
9.204
9.472
9.711
3.313
 N
N
N
C
N
 C2
N3
O4'
C5'
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 174.0 0.967 H -58.7 -37.1 174.0 0.967 0.0 DA
DA
DA
DA
DA
HOH
 9.469
9.899
9.282
9.600
9.899
7.308
 NE2
N
N
C
C
N
 N6
C2
C2
C4'
C5'
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLN A:177 A:287 135.0 0.75 H -59.8 -35.1 135.0 0.75 0.0 DA
DA
DA
DA
HOH
 9.863
9.855
9.620
9.837
3.544
 N
N
N
C
N
 N1
C8
C4'
C5'
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 GLN B:140 A:287 123.0 0.683 H -71.2 -30.2 123.0 0.683 0.0 BRU
BRU
 9.642
9.897
 C
C
 C4'
C5'
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 GLN A:140 A:287 112.0 0.622 H -59.3 -46.9 112.0 0.622 0.0 HOH
 3.800
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ARG A:287 A:287 136.0 0.604 H -55.8 -41.7