Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98087271 . A C CCDS7447.1:NM_004088.3:c.921gaA>gaC_NP_004079.3:p.307E>D Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 GLU A:178 A:307 20.0 0.105 H -68.5 -40.0 20.0 0.105 0.0 HOH
 5.834
 OE1
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLU A:178 A:307 18.0 0.095 H -70.2 -43.1 18.0 0.095 0.0 1FO
HOH
 9.790
3.369
 C
OE2
 FAF
O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 GLU A:178 A:307 20.0 0.105 H -67.8 -43.8 20.0 0.105 0.0 HOH
 3.321
 OE2
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 20.0 0.105 H -68.9 -46.6 20.0 0.105 0.0 HOH
 5.093
 N
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 23.0 0.121 H -71.4 -43.9 23.0 0.121 0.0 HOH
 2.579
 OE2
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 22.0 0.116 H -66.7 -45.8 22.0 0.116 0.0 HOH
 2.526
 OE2
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 26.0 0.137 H -66.8 -45.6 26.0 0.137 0.0 HOH
 2.617
 OE2
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 24.0 0.126 H -67.2 -44.8 24.0 0.126 0.0 HOH
 3.139
 OE2
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 24.0 0.126 H -68.0 -43.3 24.0 0.126 0.0 HOH
 2.611
 OE2
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 25.0 0.132 H -68.6 -44.0 25.0 0.132 0.0 HOH
 3.143
 OE2
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 24.0 0.126 H -68.7 -43.9 24.0 0.126 0.0 HOH
 2.540
 OE2
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 24.0 0.126 H -67.7 -44.5 24.0 0.126 0.0 HOH
 2.624
 OE2
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 23.0 0.121 H -68.6 -45.4 23.0 0.121 0.0 HOH
 3.202
 OE2
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 19.0 0.1 H -66.3 -45.0 19.0 0.1 0.0 HOH
 4.686
 OE1
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 8.0 0.042 H -71.8 -43.3 8.0 0.042 0.0 ZN
HOH
 2.074
3.590
 OE2
OE2
 ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 GLU A:197 A:307 25.0 0.132 H -64.0 -47.5 25.0 0.132 0.0 HOH
 2.672
 OE2
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 25.0 0.132 H -66.7 -46.0 25.0 0.132 0.0
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 20.0 0.105 H -67.7 -45.2 20.0 0.105 0.0 HOH
 2.712
 OE2
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 24.0 0.126 H -67.9 -45.7 24.0 0.126 0.0 HOH
 3.819
 OE2
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 21.0 0.111 H -66.2 -46.6 21.0 0.111 0.0 HOH
 2.670
 OE2
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:197 A:307 58.0 0.305 H -63.3 -41.5 58.0 0.305 0.0 SO4
HOH
 9.035
4.597
 OE2
OE1
 O2
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:197 A:307 23.0 0.121 H -67.6 -48.4 23.0 0.121 0.0 SO4
HOH
 9.597
2.712
 OE2
OE2
 O2
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 GLU A:197 A:307 30.0 0.158 H -67.7 -42.1 30.0 0.158 0.0 HOH
 5.740
 OE2
 O
GLU B:197 B:307 28.0 0.147 H -67.5 -43.0 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLU A:178 A:307 16.0 0.084 H -67.3 -45.5 16.0 0.084 0.0 HOH
 4.759
 N
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 GLU A:178 A:307 18.0 0.095 H -67.3 -45.3 18.0 0.095 0.0 1FO
HOH
 9.758
3.750
 C
OE2
 FAF
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 24.0 0.126 H -65.6 -45.2 24.0 0.126 0.0 HOH
 6.148
 OE1
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 51.0 0.268 H -66.4 -44.9 51.0 0.268 0.0 HOH
 8.274
 O
 O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 21.0 0.111 H -66.1 -46.7 21.0 0.111 0.0 HOH
 3.885
 OE1
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 41.0 0.216 H -66.5 -44.8 41.0 0.216 0.0 HOH
 3.204
 OE1
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 4.0 NA H -68.6 -44.8 4.0 NA NA HOH
 7.317
 O
 O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 24.0 0.126 H -66.6 -46.0 24.0 0.126 0.0 HOH
 3.455
 OE1
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 GLU A:197 A:307 32.0 0.168 H -65.6 -47.1 32.0 0.168 0.0 HOH
 3.610
 OE2
 O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 GLU B:160 A:307 17.0 0.089 H -61.0 -39.4 17.0 0.089 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 GLU A:160 A:307 12.0 0.063 H -77.7 -50.2 12.0 0.063 0.0 HOH
 6.887
 OE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 GLU A:307 A:307 1.0 0.005 H -64.1 -41.6