Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98087342 | . | C | A | CCDS7447.1:NM_004088.3:c.992aCa>aAa_NP_004079.3:p.331T>K | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | THR | A:202 | A:331 | 1.0 | 0.007 | -117.9 | -152.0 | 1.0 | 0.007 | 0.0 |
MG HOH |
7.088 2.922 |
OG1 O |
MG O |
|||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | THR | A:202 | A:331 | 1.0 | 0.007 | -115.4 | -153.9 | 1.0 | 0.007 | 0.0 |
1FO HOH |
2.968 5.609 |
O N |
FAF O |
|||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | THR | A:202 | A:331 | 2.0 | 0.014 | -113.5 | -152.9 | 2.0 | 0.014 | 0.0 |
1FQ HOH |
5.535 2.553 |
OG1 O |
CAN O |
|||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 0.0 | 0.0 | -112.0 | -154.1 | 0.0 | 0.0 | 0.0 |
2DT MG D3T HOH |
8.195 5.940 5.659 2.959 |
OG1 O O O |
C2' MG O2B O |
|||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 0.0 | 0.0 | -116.0 | -152.3 | 0.0 | 0.0 | 0.0 |
DA DA ZN MG HOH |
7.778 5.581 7.030 5.758 2.552 |
OG1 C OG1 O O |
O3' O3' ZN MG O |
|||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -109.9 | -150.3 | 1.0 | 0.007 | 0.0 |
DA DA MN MN HOH |
7.888 5.584 7.267 5.962 2.754 |
OG1 OG1 OG1 O O |
O3' O4' MN MN O |
|||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 2.0 | 0.014 | -113.7 | -152.6 | 2.0 | 0.014 | 0.0 |
DA MG HOH |
7.169 5.225 2.763 |
OG1 O O |
O3' MG O |
|||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -114.0 | -151.3 | 1.0 | 0.007 | 0.0 |
MG APC MG HOH |
5.572 5.477 7.114 2.698 |
O O OG1 O |
MG O2B MG O |
|||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -115.1 | -152.2 | 1.0 | 0.007 | 0.0 |
APC MN MN HOH |
5.098 7.179 5.786 2.763 |
OG1 OG1 O O |
O4' MN MN O |
|||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -112.5 | -153.3 | 1.0 | 0.007 | 0.0 |
MG APC ZN HOH |
5.641 5.431 7.060 2.623 |
O O OG1 O |
MG O2B ZN O |
|||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -114.0 | -150.8 | 1.0 | 0.007 | 0.0 |
CO APC CO HOH |
5.873 4.866 7.217 2.726 |
O OG1 OG1 O |
CO O4' CO O |
|||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -115.4 | -151.5 | 1.0 | 0.007 | 0.0 |
DA DA MG ZN HOH |
7.710 5.845 5.302 6.978 2.678 |
OG1 OG1 O OG1 O |
O3' O4' MG ZN O |
|||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -113.7 | -154.8 | 1.0 | 0.007 | 0.0 |
DA DA CO MG HOH |
7.654 5.906 7.033 5.451 2.709 |
OG1 C OG1 O OG1 |
O3' C5' CO MG O |
|||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 2.0 | 0.014 | -112.6 | -151.6 | 2.0 | 0.014 | 0.0 |
MG ZN APC HOH |
5.470 7.001 5.728 2.855 |
O OG1 OG1 O |
MG ZN O4' O |
|||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -114.7 | -154.1 | 1.0 | 0.007 | 0.0 |
AP5 ZN MG HOH |
5.389 7.055 5.699 2.658 |
O OG1 O O |
O2E ZN MG O |
|||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | THR | A:221 | A:331 | 1.0 | 0.007 | -111.6 | -154.6 | 1.0 | 0.007 | 0.0 |
DCP ZN ZN HOH |
5.195 7.166 5.618 6.089 |
O OG1 O N |
O2B ZN ZN O |
|||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | -112.1 | -152.9 | 0.0 | 0.0 | 0.0 |
DC MG DCT HOH |
8.372 6.031 5.532 5.194 |
OG1 O O O |
C3' MG O2B O |
|||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | -114.7 | -153.8 | 0.0 | 0.0 | 0.0 |
DC MG MG DCT HOH |
8.421 5.797 7.398 5.375 2.695 |
OG1 O OG1 O O |
C2' MG MG O2B O |
|||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | -116.9 | -154.3 | 0.0 | 0.0 | 0.0 |
DC MG MG DCT HOH |
8.158 5.774 7.022 5.425 2.718 |
OG1 O OG1 O O |
C2' MG MG O2B O |
|||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 1.0 | 0.007 | -116.3 | -152.9 | 1.0 | 0.007 | 0.0 |
DC MG DCT HOH |
8.224 5.822 5.480 2.804 |
OG1 O O O |
C2' MG O2B O |
|||
| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | THR | A:221 | A:331 | 0.0 | 0.0 | E | -105.1 | -162.7 | 0.0 | 0.0 | 0.0 |
DG DC MG POP HOH |
7.613 5.723 5.570 5.500 6.464 |
OG1 OG1 O O N |
O3' C5' MG O2 O |
||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | THR | A:221 | A:331 | 0.0 | 0.0 | E | -112.2 | -156.2 | 0.0 | 0.0 | 0.0 |
DG DC MG SO4 HOH |
7.602 5.804 5.862 5.609 2.688 |
OG1 OG1 O O O |
O3' C5' MG O4 O |
||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | THR | A:221 | A:331 | 0.0 | 0.0 | -104.8 | -153.1 | 0.0 | 0.0 | 0.0 |
DA DC MG SO4 HOH |
7.745 5.886 5.993 5.532 2.641 |
OG1 OG1 O O O |
O3' C5' MG O2 O |
|||
| THR | B:221 | B:331 | 0.0 | 0.0 | E | -104.8 | -153.5 | NA | NA | NA | |||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | THR | A:202 | A:331 | 1.0 | 0.007 | -112.6 | -153.6 | 1.0 | 0.007 | 0.0 |
1FQ HOH |
5.154 2.958 |
OG1 O |
NAP O |
|||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | THR | A:202 | A:331 | 1.0 | 0.007 | -113.4 | -152.7 | 1.0 | 0.007 | 0.0 |
1FO HOH |
2.725 6.100 |
O N |
FAF O |
|||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | E | -130.0 | -177.0 | 0.0 | 0.0 | 0.0 |
DC MG MG DCT HOH |
8.467 5.381 7.099 5.359 5.942 |
OG1 O OG1 O N |
C3' MG MG O2B O |
||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | -114.4 | -153.5 | 0.0 | 0.0 | 0.0 |
DC MG MG DCT HOH |
9.251 5.628 7.240 5.473 2.705 |
OG1 O OG1 O O |
O5' MG MG O2B O |
|||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 2.0 | 0.014 | -112.9 | -150.7 | 2.0 | 0.014 | 0.0 |
DC MG MG DCT HOH |
8.277 5.966 7.243 5.445 2.727 |
OG1 O OG1 O OG1 |
C3' MG MG O2B O |
|||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 1.0 | 0.007 | -112.1 | -152.7 | 1.0 | 0.007 | 0.0 |
DC MG MG DCT HOH |
9.012 5.775 8.187 5.619 3.260 |
OG1 O OG1 O O |
C2' MG MG O2B O |
|||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 1.0 | 0.007 | -113.2 | -150.1 | 1.0 | 0.007 | 0.0 |
MG MG DCT HOH |
5.726 7.130 5.681 2.734 |
O OG1 O O |
MG MG O2B O |
|||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 1.0 | 0.007 | -113.2 | -152.0 | 1.0 | 0.007 | 0.0 |
MG MG DCT HOH |
7.990 5.812 5.558 3.141 |
OG1 O O O |
MG MG O2B O |
|||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | THR | A:221 | A:331 | 0.0 | 0.0 | -113.6 | -152.2 | 0.0 | 0.0 | 0.0 |
DA DC ZN MG DCT HOH |
7.837 5.828 6.861 5.952 5.591 2.693 |
OG1 OG1 OG1 O C O |
O3' C5' ZN MG O2B O |
|||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | THR | B:184 | A:331 | 1.0 | 0.007 | E | -109.1 | -166.5 | 1.0 | 0.007 | 0.0 |
BRU BRU MG |
7.362 5.804 7.181 |
OG1 C OG1 |
O3' C5' MG |
||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | THR | A:184 | A:331 | 0.0 | 0.0 | E | -114.4 | -176.6 | 0.0 | 0.0 | 0.0 |
CO CO DAD |
5.510 7.544 5.769 |
O O O |
CO CO O2B |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | THR | A:331 | A:331 | 1.0 | 0.007 | -114.5 | -149.7 | ||