Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98088541 | . | A | C | CCDS7447.1:NM_004088.3:c.1067gAt>gCt_NP_004079.3:p.356D>A | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | ASP | A:227 | A:356 | 109.0 | 0.727 | H | -74.2 | -50.2 | 109.0 | 0.727 | 0.0 |
HOH |
5.490 |
N |
O |
||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:227 | A:356 | 53.0 | NA | H | -70.3 | -45.5 | 53.0 | NA | NA |
HOH |
9.997 |
O |
O |
||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:227 | A:356 | 124.0 | 0.827 | H | -72.1 | -44.8 | 124.0 | 0.827 | 0.0 |
HOH |
5.427 |
O |
O |
||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 105.0 | 0.7 | H | -74.1 | -46.0 | 105.0 | 0.7 | 0.0 |
HOH |
4.312 |
CB |
O |
||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 64.0 | NA | H | -75.4 | -44.9 | 64.0 | NA | NA |
HOH |
3.157 |
CB |
O |
||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 123.0 | 0.82 | H | -71.0 | -43.5 | 123.0 | 0.82 | 0.0 |
HOH |
6.670 |
O |
O |
||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 108.0 | 0.72 | H | -71.6 | -44.0 | 108.0 | 0.72 | 0.0 |
HOH |
5.114 |
O |
O |
||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 110.0 | 0.733 | H | -71.9 | -43.5 | 110.0 | 0.733 | 0.0 |
HOH |
6.728 |
O |
O |
||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 108.0 | 0.72 | H | -71.2 | -43.7 | 108.0 | 0.72 | 0.0 |
HOH |
6.039 |
C |
O |
||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 108.0 | 0.72 | H | -71.0 | -43.8 | 108.0 | 0.72 | 0.0 |
HOH |
7.632 |
O |
O |
||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 109.0 | 0.727 | H | -73.0 | -42.7 | 109.0 | 0.727 | 0.0 |
HOH |
6.588 |
O |
O |
||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 128.0 | 0.853 | H | -71.9 | -43.9 | 128.0 | 0.853 | 0.0 |
HOH |
5.048 |
O |
O |
||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 134.0 | 0.893 | H | -69.9 | -45.4 | 134.0 | 0.893 | 0.0 |
HOH |
4.627 |
O |
O |
||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 136.0 | 0.907 | H | -70.7 | -44.5 | 136.0 | 0.907 | 0.0 |
HOH |
6.916 |
N |
O |
||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 70.0 | NA | H | -75.0 | -45.1 | 70.0 | NA | NA |
HOH |
4.910 |
CB |
O |
||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | ASP | A:246 | A:356 | 124.0 | 0.827 | H | -73.5 | -41.6 | 124.0 | 0.827 | 0.0 |
HOH |
3.720 |
OD2 |
O |
||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 70.0 | NA | H | -70.9 | -43.9 | 70.0 | NA | NA |
HOH |
9.823 |
N |
O |
||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 107.0 | 0.713 | H | -69.7 | -45.0 | 107.0 | 0.713 | 0.0 |
HOH |
4.905 |
N |
O |
||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 106.0 | 0.707 | H | -70.4 | -45.5 | 106.0 | 0.707 | 0.0 |
HOH |
4.890 |
N |
O |
||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 108.0 | 0.72 | H | -70.8 | -44.5 | 108.0 | 0.72 | 0.0 |
HOH |
3.775 |
OD1 |
O |
||
| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:246 | A:356 | 86.0 | NA | H | -82.8 | -37.9 | 86.0 | NA | NA | ||||||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:246 | A:356 | 111.0 | 0.74 | H | -64.6 | -48.8 | 111.0 | 0.74 | 0.0 |
PG4 HOH |
9.755 2.678 |
C OD1 |
C4 O |
||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | ASP | A:246 | A:356 | 56.0 | NA | H | -71.5 | -37.5 | 56.0 | NA | NA |
HOH |
5.802 |
O |
O |
||
| ASP | B:246 | B:356 | 76.0 | NA | H | -71.9 | -36.3 | NA | NA | NA | |||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:227 | A:356 | 125.0 | 0.833 | H | -71.0 | -44.3 | 125.0 | 0.833 | 0.0 |
HOH |
3.050 |
OD2 |
O |
||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | ASP | A:227 | A:356 | 66.0 | NA | H | -73.5 | -43.2 | 66.0 | NA | NA |
HOH |
6.694 |
O |
O |
||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 71.0 | NA | H | -59.8 | -43.2 | 71.0 | NA | NA |
HOH |
8.750 |
O |
O |
||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 69.0 | NA | H | -71.7 | -43.2 | 69.0 | NA | NA | ||||||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 70.0 | NA | H | -71.0 | -43.8 | 70.0 | NA | NA |
HOH |
9.437 |
N |
O |
||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 75.0 | NA | H | -71.9 | -43.6 | 75.0 | NA | NA |
HOH |
9.109 |
N |
O |
||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 73.0 | NA | H | -71.4 | -42.3 | 73.0 | NA | NA | ||||||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 74.0 | NA | H | -71.1 | -44.5 | 74.0 | NA | NA | ||||||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | ASP | A:246 | A:356 | 72.0 | NA | H | -70.0 | -44.9 | 72.0 | NA | NA |
HOH |
5.976 |
N |
O |
||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | ASP | B:209 | A:356 | 113.0 | 0.753 | H | -45.9 | -55.4 | 113.0 | 0.753 | 0.0 | ||||||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | ASP | A:209 | A:356 | 100.0 | 0.667 | T | -120.6 | -49.9 | 100.0 | 0.667 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | ASP | A:356 | A:356 | 83.0 | 0.553 | H | -69.5 | -19.4 | |