Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98092120 . T A CCDS7447.1:NM_004088.3:c.1126Tat>Aat_NP_004079.3:p.376Y>N Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 TYR A:248 A:377 30.0 0.13 E -159.7 136.1 30.0 0.13 0.0 HOH
 4.149
 OH
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 TYR A:248 A:377 30.0 0.13 E -155.2 144.5 30.0 0.13 0.0 HOH
 3.482
 CA
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 TYR A:248 A:377 28.0 0.122 E -153.0 143.2 28.0 0.122 0.0 HOH
 2.635
 OH
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 33.0 0.143 E -151.0 141.7 33.0 0.143 0.0 DA
DA
DA
2DT
HOH
 8.823
7.556
6.799
9.860
2.828
 OH
OH
OH
CE2
OH
 C2
C8
O4'
P
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 35.0 0.152 E -155.8 142.4 35.0 0.152 0.0 DA
DA
DA
DA
HOH
 9.582
8.116
6.730
9.766
2.686
 OH
OH
OH
CE2
OH
 C2
C2'
O4'
P
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 31.0 0.135 E -155.0 143.8 31.0 0.135 0.0 DA
8BA
DA
HOH
 8.489
6.034
9.519
3.055
 OH
OH
CE2
OH
 O4'
BR
P
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 33.0 0.143 E -154.0 144.1 33.0 0.143 0.0 DA
DA
BRU
DA
DA
HOH
 9.342
8.031
6.419
6.711
9.808
3.449
 OH
OH
OH
OH
CE2
CA
 C2
C2
O2
O4'
P
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 33.0 0.143 E -155.5 143.6 33.0 0.143 0.0 DA
DA
HOH
 8.016
7.758
3.494
 OH
CE2
CA
 O4'
O3'
O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 30.0 0.13 E -153.4 142.7 30.0 0.13 0.0 DA
DA
HOH
 7.999
6.771
2.766
 OH
CE2
OH
 C1'
O3'
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 31.0 0.135 E -155.1 143.6 31.0 0.135 0.0 HOH
 3.568
 CA
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 30.0 0.13 E -153.5 142.4 30.0 0.13 0.0 DA
DA
APC
HOH
 7.737
6.716
9.987
3.501
 OH
OH
CE2
CD1
 C2'
C4'
N6
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 30.0 0.13 E -154.7 144.5 30.0 0.13 0.0 DA
DA
DA
HOH
 7.626
6.505
9.628
2.710
 OH
OH
CE2
OH
 C2'
O4'
P
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 30.0 0.13 E -153.5 143.5 30.0 0.13 0.0 DA
DA
HOH
 8.109
6.392
3.467
 OH
OH
CA
 O4'
O4'
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 36.0 0.157 E -156.6 144.4 36.0 0.157 0.0 DA
DA
HOH
 7.812
7.461
5.334
 OH
CE2
OH
 C1'
C5'
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 34.0 0.148 E -151.8 144.5 34.0 0.148 0.0 HOH
 3.435
 CD1
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 TYR A:267 A:377 31.0 0.135 E -154.8 145.1 31.0 0.135 0.0 HOH
 3.743
 CA
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 36.0 0.157 E -154.0 141.9 36.0 0.157 0.0 DA
DA
DA
DC
HOH
 9.823
7.820
6.662
9.576
3.380
 OH
OH
OH
CE2
OH
 C8
C8
O4'
OP1
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 30.0 0.13 E -154.4 139.7 30.0 0.13 0.0 DA
DA
DA
DC
HOH
 9.837
7.441
6.504
9.632
2.683
 OH
OH
OH
CE2
OH
 C8
C8
O4'
P
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 29.0 0.126 E -153.8 141.1 29.0 0.126 0.0 DA
DA
DA
DC
DCT
HOH
 9.412
7.433
6.549
9.503
8.603
3.474
 OH
OH
OH
CE2
CE1
CD1
 C2
C8
O4'
P
O3G
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 33.0 0.143 E -153.6 139.7 33.0 0.143 0.0 DA
DA
DC
HOH
 7.828
6.487
9.621
3.674
 OH
OH
CE2
CA
 C8
O4'
P
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 TYR A:267 A:377 24.0 0.104 E -139.7 141.8 24.0 0.104 0.0 DA
DA
DA
DA
DT
DT
DG
HOH
 9.662
7.785
6.593
8.045
8.598
7.550
9.162
4.525
 OH
OH
OH
OH
OH
OH
CE2
CA
 C2
O3'
C5'
OP1
O2
C5'
OP1
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 TYR A:267 A:377 35.0 0.152 E -152.1 138.5 35.0 0.152 0.0 DA
DA
DA
DA
DT
DG
DG
HOH
 8.918
7.015
5.966
7.602
8.022
6.876
9.408
2.764
 OH
OH
OH
OH
OH
OH
CE2
OH
 C2
O3'
C5'
OP1
O2
O4'
OP1
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 TYR A:267 A:377 32.0 0.139 E -148.0 148.5 32.0 0.139 0.0 DA
DA
DA
DA
HOH
 9.437
8.307
6.798
9.484
4.407
 OH
OH
OH
CE2
OH
 C2
C1'
O4'
P
O
TYR B:267 B:377 35.0 0.152 E -148.0 148.6 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 TYR A:248 A:377 32.0 0.139 E -153.1 145.0 32.0 0.139 0.0 DC
DC
HOH
 8.190
6.155
3.277
 OH
OH
OH
 O3'
C6
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 TYR A:248 A:377 34.0 0.148 E -154.4 143.4 34.0 0.148 0.0 DC
DC
HOH
 8.517
6.781
3.861
 OH
CE2
CD1
 C2'
O4'
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 23.0 0.1 E -153.7 141.7 23.0 0.1 0.0 DA
DA
DA
HOH
 9.385
7.975
8.007
6.165
 OH
OH
OH
OH
 C2
O3'
OP1
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 25.0 0.109 E -154.4 142.5 25.0 0.109 0.0 DA
DA
DA
HOH
 9.217
6.977
8.366
3.251
 OH
OH
OH
OH
 C2
C8
O4'
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 34.0 0.148 E -154.6 144.5 34.0 0.148 0.0 DA
DA
DA
DC
HOH
 8.636
7.359
6.336
9.435
4.785
 OH
OH
OH
CE2
OH
 C2
C8
O4'
P
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 32.0 0.139 E -154.4 144.2 32.0 0.139 0.0 DA
DA
DA
DC
HOH
 8.033
7.334
6.668
9.610
3.272
 OH
OH
OH
CE2
OH
 C2
C8
O4'
P
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 32.0 0.139 E -158.3 143.7 32.0 0.139 0.0 DA
DA
DA
DC
HOH
 8.097
6.645
6.219
9.414
7.541
 OH
OH
OH
CE2
OH
 C2
C8
O4'
P
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 31.0 0.135 E -154.7 144.1 31.0 0.135 0.0 DA
DA
DA
DC
HOH
 7.674
7.280
6.511
9.641
6.842
 OH
OH
OH
CE2
C
 C2
C8
O4'
P
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 TYR A:267 A:377 34.0 0.148 E -154.3 144.0 34.0 0.148 0.0 DA
DA
DA
DA
HOH
 9.590
7.937
6.717
9.643
7.318
 OH
OH
OH
CE2
OH
 C8
C1'
O4'
P
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 TYR B:230 A:377 31.0 0.135 E -167.4 153.3 31.0 0.135 0.0 BRU
BRU
 8.118
7.042
 OH
OH
 O3'
C5'
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 TYR A:230 A:377 26.0 0.113 E -169.5 148.2 26.0 0.113 0.0 HOH
 7.575
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 TYR A:376 A:376 11.0 0.048 E -157.4 149.5