Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98092210 . A C CCDS7447.1:NM_004088.3:c.1216Att>Ctt_NP_004079.3:p.406I>L Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 ILE A:278 A:407 0.0 0.0 E -131.9 116.0 0.0 0.0 0.0 HOH
 6.629
 CD1
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ILE A:278 A:407 0.0 0.0 E -125.8 116.5 0.0 0.0 0.0 HOH
 6.666
 CD1
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ILE A:278 A:407 0.0 0.0 E -125.8 116.7 0.0 0.0 0.0 HOH
 6.571
 CD1
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -123.5 115.8 0.0 0.0 0.0 DA
2DT
HOH
 8.734
9.340
6.515
 CD1
CG1
CD1
 C5'
OP1
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -124.7 117.7 0.0 0.0 0.0 DA
DA
HOH
 8.796
9.131
6.608
 CD1
CG1
CD1
 C5'
OP1
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -126.6 117.6 0.0 0.0 0.0 8BA
DA
HOH
 9.211
9.253
6.635
 CG1
CG1
CD1
 O3'
OP1
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -125.3 117.8 0.0 0.0 0.0 DA
DA
HOH
 8.849
9.326
6.611
 CD1
CG1
CD1
 C5'
OP1
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -125.2 118.0 0.0 0.0 0.0 DA
HOH
 8.890
6.744
 CG1
CD1
 O3'
O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -125.7 117.9 0.0 0.0 0.0 DA
HOH
 8.681
6.559
 CG1
CD1
 O3'
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -128.3 118.2 0.0 0.0 0.0 HOH
 6.702
 CD1
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -126.7 118.0 0.0 0.0 0.0 DA
HOH
 8.752
6.599
 CG1
CD1
 O3'
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -125.9 117.9 0.0 0.0 0.0 DA
DA
HOH
 8.898
9.224
6.648
 CD1
CG1
CD1
 C5'
OP1
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -129.1 118.8 0.0 0.0 0.0 DA
HOH
 8.973
6.563
 CD1
CD1
 C5'
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -126.7 117.5 0.0 0.0 0.0 DA
HOH
 8.890
6.506
 CD1
CD1
 C5'
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -123.3 117.6 0.0 0.0 0.0 HOH
 6.705
 CG2
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ILE A:297 A:407 0.0 0.0 E -130.3 116.4 0.0 0.0 0.0 HOH
 7.327
 CG2
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.2 115.6 0.0 0.0 0.0 DA
DC
HOH
 9.072
9.227
9.610
 CD1
CG1
CD1
 C5'
OP1
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.7 117.5 0.0 0.0 0.0 DA
DC
HOH
 8.926
9.294
6.593
 CD1
CG1
O
 C5'
OP1
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.3 116.5 0.0 0.0 0.0 DA
DC
HOH
 8.959
9.077
6.738
 CD1
CG1
O
 C5'
OP1
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.4 115.8 0.0 0.0 0.0 DA
DC
HOH
 8.946
9.182
6.693
 CD1
CG1
O
 C5'
OP1
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ILE A:297 A:407 0.0 0.0 E -124.1 109.1 0.0 0.0 0.0 DT
DG
HOH
 9.339
8.643
8.200
 CD1
CG1
O
 C5'
OP1
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ILE A:297 A:407 0.0 0.0 E -123.9 116.3 0.0 0.0 0.0 DG
DG
HOH
 9.113
8.942
6.164
 CG1
CG1
CD1
 O3'
OP1
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ILE A:297 A:407 0.0 0.0 E -126.8 114.9 0.0 0.0 0.0 DA
DA
HOH
 9.132
9.175
6.830
 CD1
CG1
CG2
 C5'
OP1
O
ILE B:297 B:407 0.0 NA E -124.2 115.3 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ILE A:278 A:407 0.0 0.0 E -127.4 119.0 0.0 0.0 0.0 DC
HOH
 9.048
6.690
 CD1
CD1
 C5'
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ILE A:278 A:407 0.0 0.0 E -127.6 115.3 0.0 0.0 0.0 DC
HOH
 8.981
7.051
 CD1
CG2
 C5'
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.1 117.4 0.0 0.0 0.0 DA
HOH
 8.850
7.098
 CD1
CG2
 OP1
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -125.3 117.2 0.0 0.0 0.0 DA
DC
HOH
 9.352
9.836
8.089
 CD1
CG1
N
 OP1
OP1
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -128.1 117.8 0.0 0.0 0.0 DA
DC
HOH
 8.778
9.010
6.656
 CD1
CG1
CD1
 C5'
OP1
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -127.4 117.3 0.0 0.0 0.0 DA
DC
HOH
 8.867
9.107
8.906
 CD1
CG1
CG2
 C5'
OP1
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -126.8 117.9 0.0 0.0 0.0 DA
DC
HOH
 8.544
9.186
7.147
 CD1
CG1
CD1
 C5'
OP1
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -125.0 117.1 0.0 0.0 0.0 DA
DC
HOH
 8.815
9.792
7.086
 CD1
CG1
CG1
 C5'
OP1
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ILE A:297 A:407 0.0 0.0 E -125.9 119.3 0.0 0.0 0.0 DA
DA
HOH
 8.894
9.246
7.019
 CD1
CG1
CG2
 C5'
OP1
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 ILE B:260 A:407 0.0 0.0 E -113.8 128.1 0.0 0.0 0.0 BRU
 9.256
 CG1
 C5'
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 ILE A:260 A:407 0.0 0.0 E -152.7 107.1 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ILE A:406 A:406 0.0 0.0 E -115.4 117.1