Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98092225 . C A CCDS7447.1:NM_004088.3:c.1231Cgt>Agt_NP_004079.3:p.411R>S Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 HIS A:283 A:412 71.0 0.364 G -56.0 -39.7 71.0 0.364 0.0
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 HIS A:283 A:412 86.0 0.441 G -66.2 -24.6 86.0 0.441 0.0 HOH
 3.320
 CA
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 HIS A:283 A:412 61.0 0.313 G -59.3 -31.9 61.0 0.313 0.0 HOH
 3.055
 CE1
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 54.0 0.277 G -55.3 -27.8 54.0 0.277 0.0 HOH
 3.461
 O
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 91.0 0.467 G -53.1 -34.6 91.0 0.467 0.0 HOH
 2.676
 ND1
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 85.0 0.436 G -58.5 -31.9 85.0 0.436 0.0 HOH
 3.192
 N
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 103.0 0.528 G -58.3 -34.6 103.0 0.528 0.0 HOH
 3.087
 ND1
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 66.0 0.338 G -55.2 -36.8 66.0 0.338 0.0 HOH
 2.671
 CD2
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 60.0 0.308 G -58.1 -33.0 60.0 0.308 0.0 HOH
 3.290
 NE2
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 100.0 0.513 G -54.8 -38.5 100.0 0.513 0.0 HOH
 2.779
 NE2
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 94.0 0.482 G -56.1 -35.6 94.0 0.482 0.0 HOH
 2.719
 CE1
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 66.0 0.338 G -57.8 -32.3 66.0 0.338 0.0 HOH
 2.509
 ND1
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 62.0 0.318 G -57.1 -35.2 62.0 0.318 0.0 HOH
 3.285
 O
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 78.0 0.4 G -58.4 -31.3 78.0 0.4 0.0 HOH
 3.518
 CG
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 71.0 0.364 G -68.0 -16.7 71.0 0.364 0.0 ZN
ZN
HOH
 9.115
1.857
3.296
 O
NE2
NE2
 ZN
ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:302 A:412 83.0 0.426 G -59.6 -31.8 83.0 0.426 0.0 ZN
HOH
 8.978
3.114
 O
CG
 ZN
O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 58.0 NA G -56.6 -34.6 58.0 NA NA
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 54.0 0.277 G -59.0 -32.2 54.0 0.277 0.0 HOH
 2.836
 NE2
 O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 94.0 0.482 G -56.8 -36.1 94.0 0.482 0.0 HOH
 2.745
 ND1
 O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 77.0 0.395 G -57.1 -34.3 77.0 0.395 0.0 HOH
 2.887
 O
 O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:302 A:412 65.0 NA G -51.1 -35.0 65.0 NA NA SO4
HOH
 8.050
3.833
 CB
CB
 O3
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:302 A:412 75.0 0.385 G -55.4 -31.9 75.0 0.385 0.0 SO4
HOH
 5.033
2.761
 NE2
ND1
 O3
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:302 A:412 60.0 0.308 G -53.1 -28.7 60.0 0.308 0.0 HOH
 4.782
 O
 O
HIS B:302 B:412 55.0 0.282 G -53.5 -29.7 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 HIS A:283 A:412 78.0 0.4 G -60.2 -31.4 78.0 0.4 0.0 HOH
 3.009
 CE1
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 HIS A:283 A:412 69.0 0.354 G -62.9 -27.8 69.0 0.354 0.0 HOH
 4.026
 CD2
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 48.0 NA G -57.0 -33.5 48.0 NA NA HOH
 6.751
 CB
 O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 98.0 0.503 G -55.7 -35.8 98.0 0.503 0.0
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 91.0 0.467 G -57.5 -31.7 91.0 0.467 0.0 HOH
 2.918
 CD2
 O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 107.0 0.549 G -54.2 -36.0 107.0 0.549 0.0 HOH
 7.464
 CE1
 O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 99.0 0.508 G -60.0 -32.6 99.0 0.508 0.0 HOH
 8.429
 C
 O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 93.0 0.477 G -57.1 -35.7 93.0 0.477 0.0 HOH
 5.251
 O
 O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:302 A:412 148.0 0.759 G -50.9 -43.1 148.0 0.759 0.0 HOH
 2.807
 NE2
 O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 HIS B:265 A:412 79.0 0.405 G -41.5 -30.2 79.0 0.405 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 HIS A:265 A:412 99.0 0.508 G -57.2 -23.1 99.0 0.508 0.0 HOH
 3.056
 CE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ARG A:411 A:411 64.0 0.284 G -58.6 -33.4