Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr10 | 98092238 | . | A | C | CCDS7447.1:NM_004088.3:c.1244gAc>gCc_NP_004079.3:p.415D>A | Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1jms | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2002-01-23 | HIS | A:287 | A:416 | 166.0 | 0.851 | -102.1 | 80.9 | 166.0 | 0.851 | 0.0 |
HOH |
9.616 |
O |
O |
|||
| 4iqt | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | HIS | A:287 | A:416 | 164.0 | 0.841 | -106.0 | 89.8 | 164.0 | 0.841 | 0.0 |
HOH |
2.787 |
N |
O |
|||
| 4iqu | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-09-04 | HIS | A:287 | A:416 | 164.0 | 0.841 | -103.7 | 86.5 | 164.0 | 0.841 | 0.0 |
HOH |
2.459 |
O |
O |
|||
| 4i27 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 161.0 | 0.826 | -99.3 | 80.3 | 161.0 | 0.826 | 0.0 |
HOH |
3.281 |
N |
O |
|||
| 4i28 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 164.0 | 0.841 | -98.6 | 83.1 | 164.0 | 0.841 | 0.0 |
HOH |
2.584 |
O |
O |
|||
| 4i29 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 161.0 | 0.826 | -104.0 | 80.4 | 161.0 | 0.826 | 0.0 |
HOH |
2.629 |
O |
O |
|||
| 4i2a | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 162.0 | 0.831 | -105.3 | 86.2 | 162.0 | 0.831 | 0.0 |
HOH |
2.606 |
O |
O |
|||
| 4i2b | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 163.0 | 0.836 | -103.7 | 85.0 | 163.0 | 0.836 | 0.0 |
HOH |
2.776 |
O |
O |
|||
| 4i2c | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 162.0 | 0.831 | -104.7 | 87.2 | 162.0 | 0.831 | 0.0 |
HOH |
2.566 |
O |
O |
|||
| 4i2d | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 164.0 | 0.841 | -107.1 | 85.6 | 164.0 | 0.841 | 0.0 |
HOH |
2.771 |
N |
O |
|||
| 4i2e | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 164.0 | 0.841 | -104.9 | 83.8 | 164.0 | 0.841 | 0.0 |
HOH |
2.633 |
O |
O |
|||
| 4i2f | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 166.0 | 0.851 | -103.0 | 87.4 | 166.0 | 0.851 | 0.0 |
HOH |
2.592 |
O |
O |
|||
| 4i2g | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 164.0 | 0.841 | -104.4 | 83.8 | 164.0 | 0.841 | 0.0 |
HOH |
2.692 |
N |
O |
|||
| 4i2h | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 165.0 | 0.846 | -107.3 | 86.0 | 165.0 | 0.846 | 0.0 |
HOH |
3.504 |
CD2 |
O |
|||
| 4i2i | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 178.0 | 0.913 | -98.0 | 92.4 | 178.0 | 0.913 | 0.0 |
ZN ZN HOH |
2.218 8.108 2.795 |
ND1 N N |
ZN ZN O |
|||
| 4i2j | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2013-07-24 | HIS | A:306 | A:416 | 164.0 | 0.841 | -104.8 | 82.2 | 164.0 | 0.841 | 0.0 |
ZN HOH |
3.305 3.446 |
CB CE1 |
ZN O |
|||
| 4qz8 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 147.0 | 0.754 | -105.0 | 86.3 | 147.0 | 0.754 | 0.0 | |||||||
| 4qz9 | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 147.0 | 0.754 | -106.6 | 86.0 | 147.0 | 0.754 | 0.0 |
HOH |
2.791 |
NE2 |
O |
|||
| 4qza | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 152.0 | 0.779 | -107.1 | 86.2 | 152.0 | 0.779 | 0.0 |
HOH |
3.565 |
NE2 |
O |
|||
| 4qzb | 1 | P09838 | 81.27 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 146.0 | 0.749 | -107.3 | 86.8 | 146.0 | 0.749 | 0.0 |
HOH |
2.810 |
NE2 |
O |
|||
| 5d46 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | HIS | A:306 | A:416 | 112.0 | NA | -114.2 | 360.0 | 112.0 | NA | NA |
HOH |
4.910 |
O |
O |
|||
| 5d49 | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | HIS | A:306 | A:416 | 129.0 | NA | -91.1 | 360.0 | 129.0 | NA | NA |
HOH |
3.242 |
N |
O |
|||
| 5d4b | 1 | Q3UZ80 | 81.27 | 0.0 |
X-RAY |
2016-07-27 | HIS | A:306 | A:416 | 135.0 | NA | -136.4 | 360.0 | 135.0 | NA | NA |
HOH |
3.301 |
CA |
O |
|||
| HIS | B:306 | B:416 | 119.0 | NA | -145.8 | 360.0 | NA | NA | NA | ||||||||||||||
| 4iqw | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | HIS | A:287 | A:416 | 165.0 | 0.846 | -104.7 | 87.6 | 165.0 | 0.846 | 0.0 |
HOH |
2.874 |
N |
O |
|||
| 4iqv | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2013-09-04 | HIS | A:287 | A:416 | 164.0 | 0.841 | -104.9 | 84.7 | 164.0 | 0.841 | 0.0 |
HOH |
3.303 |
CE1 |
O |
|||
| 4qzc | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 182.0 | 0.933 | -106.1 | 360.0 | 182.0 | 0.933 | 0.0 | |||||||
| 4qzd | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 161.0 | 0.826 | -105.3 | 85.8 | 161.0 | 0.826 | 0.0 |
HOH |
9.099 |
CD2 |
O |
|||
| 4qze | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 146.0 | NA | -68.4 | 360.0 | 146.0 | NA | NA |
HOH |
4.440 |
N |
O |
|||
| 4qzf | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 187.0 | 0.959 | -111.4 | 360.0 | 187.0 | 0.959 | 0.0 |
HOH |
6.809 |
NE2 |
O |
|||
| 4qzg | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 126.0 | NA | -103.4 | 360.0 | 126.0 | NA | NA |
HOH |
9.580 |
N |
O |
|||
| 4qzh | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | A:416 | 163.0 | 0.836 | -106.8 | 86.9 | 163.0 | 0.836 | 0.0 |
HOH |
2.967 |
ND1 |
O |
|||
| 4qzi | 1 | P09838 | 81.0 | 0.0 |
X-RAY |
2015-06-10 | HIS | A:306 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 1kdh | 2 | 12802443 | 82.92 | 0.0 |
X-RAY |
2002-05-13 | HIS | B:269 | A:416 | 165.0 | 0.846 | -90.6 | 101.2 | 165.0 | 0.846 | 0.0 | |||||||
| 1kej | 1 | P09838 | 82.92 | 0.0 |
X-RAY |
2002-05-16 | HIS | A:269 | A:416 | 106.0 | 0.544 | -117.6 | 76.8 | 106.0 | 0.544 | 0.0 |
HOH |
4.332 |
C |
O |
|||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p04053-f1 | 1 | P04053 | 100.0 | 0.0 | ASP | A:415 | A:415 | 161.0 | 1.0 | -78.7 | 72.6 | ||