Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98095658 . G A CCDS7447.1:NM_004088.3:c.1370aGa>aAa_NP_004079.3:p.457R>K Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 ARG A:329 A:458 88.0 0.391 H -58.8 -49.7 88.0 0.391 0.0 HOH
 2.677
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:329 A:458 87.0 0.387 H -57.5 -48.3 87.0 0.387 0.0 1FO
HOH
 3.143
2.864
 NH2
O
 OAB
O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:329 A:458 31.0 0.138 H -54.5 -48.9 31.0 0.138 0.0 1FQ
HOH
 4.815
2.722
 NH1
O
 OAD
O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 84.0 0.373 H -59.7 -45.8 84.0 0.373 0.0 2DT
D3T
HOH
 9.017
5.610
2.936
 NH1
NH1
O
 O4
O4
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 81.0 0.36 H -57.8 -46.6 81.0 0.36 0.0 DA
DA
HOH
 8.119
5.017
2.676
 NH1
NH1
O
 N1
N6
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 99.0 0.44 H -55.4 -46.5 99.0 0.44 0.0 DA
DA
HOH
 7.556
3.945
2.733
 NH1
NH1
O
 N1
N6
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 63.0 0.28 H -57.1 -48.9 63.0 0.28 0.0 DA
HOH
 9.064
2.779
 N
O
 N6
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 78.0 0.347 H -56.7 -48.0 78.0 0.347 0.0 APC
HOH
 7.282
2.686
 N
O
 O2'
O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 76.0 0.338 H -56.1 -49.4 76.0 0.338 0.0 APC
HOH
 7.843
2.724
 N
O
 O3'
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 28.0 0.124 H -56.2 -49.0 28.0 0.124 0.0 APC
HOH
 7.441
2.712
 N
O
 O2'
O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 73.0 0.324 H -57.6 -48.5 73.0 0.324 0.0 APC
HOH
 8.229
2.513
 N
NH2
 O3'
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 68.0 0.302 H -54.1 -47.8 68.0 0.302 0.0 DA
DA
HOH
 7.849
8.432
2.579
 NH1
N
O
 N1
C2'
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 74.0 0.329 H -57.3 -47.6 74.0 0.329 0.0 DA
HOH
 7.903
4.498
 NH1
NH2
 C8
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 106.0 0.471 H -55.7 -46.5 106.0 0.471 0.0 APC
HOH
 7.236
3.383
 N
NH1
 O2'
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 108.0 0.48 H -59.1 -48.2 108.0 0.48 0.0 AP5
ZN
HOH
 7.119
7.726
4.827
 N
O
NH2
 O3J
ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:348 A:458 102.0 0.453 H -55.1 -47.1 102.0 0.453 0.0 DCP
HOH
 8.201
5.006
 N
NH2
 C2'
O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 89.0 0.396 H -49.5 -53.2 89.0 0.396 0.0 DA
DT
DG
DG
DC
DCT
HOH
 9.782
4.607
2.759
5.891
8.264
5.898
3.010
 NH1
NH1
NH1
NH2
NH2
N
NE
 C2
O3'
OP1
O6
N4
O2
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 90.0 0.4 H -53.9 -49.5 90.0 0.4 0.0 DA
DT
DG
DA
DC
DCT
HOH
 9.940
4.825
2.741
3.925
8.398
5.781
2.882
 NH1
NH1
NH1
NH1
NH2
N
NH2
 C2
O3'
OP1
N6
N4
O2
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 66.0 0.293 H -66.8 -36.5 66.0 0.293 0.0 DT
DG
DC
DC
DCT
HOH
 4.730
2.731
5.859
8.992
5.853
3.128
 NH1
CD
O
NH2
N
NE
 O3'
OP2
OP1
N4
O2
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 83.0 0.369 H -54.6 -49.3 83.0 0.369 0.0 DT
DG
DT
DC
DCT
HOH
 4.810
2.763
6.175
8.756
5.719
3.099
 NH1
NH1
O
NH2
N
NH2
 O3'
OP1
OP1
N4
O2
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:348 A:458 72.0 0.32 H -64.7 -28.7 72.0 0.32 0.0 DG
DC
DT
DG
DC
DA
HOH
 7.703
5.568
4.942
2.816
6.489
9.900
3.227
 NH2
N
NH1
CD
CA
NH1
NH2
 O6
O2
O3'
OP2
O4'
C2
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:348 A:458 70.0 0.311 H -71.1 -30.4 70.0 0.311 0.0 DG
DC
DT
DG
DG
DC
HOH
 7.798
5.711
4.950
2.743
5.445
6.144
3.179
 NH2
N
NH1
CD
O
NH2
NE
 O6
O2
O3'
OP2
OP2
N4
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:348 A:458 100.0 0.444 H -52.5 -44.5 100.0 0.444 0.0 DA
DC
DA
DC
SO4
HOH
 7.525
5.028
7.152
4.805
5.017
2.814
 NH2
NH2
O
O
NH2
NH2
 N6
N4
O3'
C5'
O4
O
ARG B:348 B:458 77.0 0.342 H -44.4 -44.2 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:329 A:458 49.0 0.218 H -56.5 -47.7 49.0 0.218 0.0 1FQ
HOH
 4.876
4.031
 NH1
NH1
 OAD
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:329 A:458 62.0 0.276 H -54.6 -47.9 62.0 0.276 0.0 1FO
HOH
 4.716
2.823
 NH2
NE
 OAD
O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 80.0 0.356 H -50.4 -54.3 80.0 0.356 0.0 DA
DT
DG
DG
DC
DCT
HOH
 9.910
4.573
2.734
5.862
7.210
5.832
5.347
 NH1
NH1
NH1
O
NH2
N
NH1
 C2
O3'
OP1
OP2
N4
O2
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 71.0 0.316 H -67.2 -37.0 71.0 0.316 0.0 DA
DT
DG
DC
DCT
HOH
 9.995
4.697
2.702
5.818
5.873
6.368
 NH1
NH1
CD
O
N
NH2
 C2
O3'
OP2
OP2
O2
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 79.0 0.351 H -56.8 -46.4 79.0 0.351 0.0 DA
DT
DG
DG
DC
DCT
HOH
 9.694
4.974
2.912
6.355
8.764
5.843
2.816
 NH2
NH2
NE
O
NH1
N
NH2
 C2
O3'
OP2
OP1
N4
O2
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 81.0 0.36 H -61.2 -46.6 81.0 0.36 0.0 DA
DT
DG
DA
DC
DCT
HOH
 9.676
4.323
2.527
5.890
7.925
6.132
3.025
 NH1
NH1
NH1
NH2
N
N
NH2
 C2
O3'
OP1
N6
N4
O2
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 81.0 0.36 H -61.5 -46.0 81.0 0.36 0.0 DA
DT
DG
DC
DC
DCT
HOH
 9.808
4.520
2.643
6.068
6.937
5.793
8.951
 NH2
NH2
NH2
O
NH1
N
NE
 C2
O3'
OP1
OP2
N3
O2
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 88.0 0.391 H -51.8 -52.0 88.0 0.391 0.0 DA
DT
DG
DT
DCT
HOH
 9.707
4.554
2.727
6.087
5.987
4.195
 NH1
NH1
NH1
O
N
CD
 C2
O3'
OP1
OP2
O2
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:348 A:458 84.0 0.373 H -54.0 -51.3 84.0 0.373 0.0 DA
DT
DG
DG
DA
DC
HOH
 9.216
4.883
2.794
6.149
7.983
5.880
2.884
 NH2
NH2
NH2
O
CG
N
NH1
 C2
O3'
OP1
OP1
N1
O2
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 ARG B:311 A:458 78.0 0.347 H -58.7 -52.8 78.0 0.347 0.0 BRU
BRU
 9.587
5.204
 NH1
N
 O4
O2
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 ARG A:311 A:458 82.0 0.364 H -45.2 -62.0 82.0 0.364 0.0 DAD
 7.596
 N
 C2'

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ARG A:457 A:457 27.0 0.12 H -57.0 -46.8