Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98095667 . G A CCDS7447.1:NM_004088.3:c.1379cGg>cAg_NP_004079.3:p.460R>Q Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 ARG A:332 A:461 35.0 0.156 H -65.8 -46.6 35.0 0.156 0.0 HOH
 2.701
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:332 A:461 71.0 0.316 H -68.2 -37.8 71.0 0.316 0.0 HOH
 2.767
 O
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:332 A:461 18.0 0.08 H -69.1 -39.4 18.0 0.08 0.0 1FQ
HOH
 8.417
2.935
 CD
O
 FAF
O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 89.0 0.396 H -69.9 -38.9 89.0 0.396 0.0 2DT
D3T
HOH
 7.154
3.873
3.089
 NH2
NH1
NH2
 O2
O2
O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 97.0 0.431 H -70.1 -38.2 97.0 0.431 0.0 DA
DA
HOH
 9.589
6.875
2.692
 NE
NE
O
 C2
C2
O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 68.0 0.302 H -70.4 -37.8 68.0 0.302 0.0 DA
DA
HOH
 6.794
3.407
2.712
 NH2
NH1
O
 C2
C2
O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 29.0 0.129 H -69.6 -37.8 29.0 0.129 0.0 DA
HOH
 5.125
2.791
 NH2
NH1
 N6
O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 26.0 0.116 H -69.9 -40.2 26.0 0.116 0.0 APC
HOH
 5.670
2.647
 NH1
NH2
 C2
O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 26.0 0.116 H -69.3 -39.6 26.0 0.116 0.0 APC
HOH
 6.334
2.823
 NH2
O
 O2'
O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 24.0 0.107 H -68.0 -38.2 24.0 0.107 0.0 APC
HOH
 5.888
3.053
 NH1
O
 C2
O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 34.0 0.151 H -69.0 -39.6 34.0 0.151 0.0 APC
HOH
 6.555
2.765
 NH2
NH1
 O2'
O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 12.0 0.053 H -69.4 -39.2 12.0 0.053 0.0 DA
DA
HOH
 9.399
8.074
2.696
 NH2
CD
O
 C2
C2
O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 16.0 0.071 H -68.4 -39.2 16.0 0.071 0.0 DA
HOH
 8.078
2.763
 CD
O
 N1
O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 63.0 NA H -68.6 -39.3 63.0 NA NA ZN
APC
HOH
 9.338
7.906
4.047
 CD
NE
CD
 ZN
N3
O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 76.0 0.338 H -70.0 -38.4 76.0 0.338 0.0 AP5
ZN
ZN
HOH
 6.370
6.704
7.726
2.877
 NH1
O
NH2
O
 O2J
ZN
ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:351 A:461 68.0 0.302 H -70.4 -38.1 68.0 0.302 0.0 DCP
ZN
HOH
 4.625
8.367
2.654
 NH1
NE
NH1
 O2
ZN
O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 85.0 0.378 H -69.0 -39.1 85.0 0.378 0.0 DT
DT
DG
DG
DC
DCT
HOH
 9.597
7.372
3.524
3.146
6.959
4.863
3.344
 O
O
NH1
NH2
NH1
NH1
NH1
 O3'
OP1
N2
O4'
O2
O2
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 72.0 0.32 H -68.0 -40.0 72.0 0.32 0.0 DT
DT
DG
DA
DC
DCT
HOH
 9.308
7.032
3.537
3.250
7.277
5.107
2.788
 O
O
CB
O
NH1
NH1
NH2
 O3'
OP1
O3'
OP2
O2
O2
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 61.0 0.271 H -68.7 -40.0 61.0 0.271 0.0 DT
DT
DG
DC
DC
DCT
HOH
 9.392
7.104
3.528
3.373
8.324
5.723
2.768
 O
O
CB
O
NH1
NH1
NH2
 O3'
OP1
O3'
OP1
O2
O2
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 64.0 0.284 H -68.6 -38.3 64.0 0.284 0.0 DT
DT
DG
DT
DC
DCT
HOH
 9.380
7.098
3.503
3.572
7.951
5.705
2.861
 O
O
CB
O
NH1
NH1
NH2
 O3'
OP1
O3'
OP1
O2
O2
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:351 A:461 70.0 0.311 H -69.1 -47.2 70.0 0.311 0.0 DG
DC
DT
DT
DG
DC
HOH
 5.029
5.805
9.422
7.339
3.536
2.870
3.077
 NH1
NH1
O
O
CB
NE
NH1
 N2
O2
O3'
OP1
O3'
O4'
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:351 A:461 119.0 0.529 H -62.2 -50.8 119.0 0.529 0.0 DG
DC
DT
DT
DG
DG
DC
HOH
 6.582
6.849
9.470
7.306
3.412
3.012
3.219
2.944
 NH1
NE
O
O
CD
NH2
NH1
NH1
 N2
O2
O3'
OP1
O4'
OP1
C2'
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:351 A:461 64.0 NA H -66.7 -39.6 64.0 NA NA DA
DC
DA
DC
HOH
 8.282
6.318
7.877
4.174
4.140
 NE
NE
C
O
CB
 C2
O2
O3'
C4'
O
ARG B:351 B:461 97.0 0.431 H -67.1 -39.6 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:332 A:461 23.0 0.102 H -69.1 -36.6 23.0 0.102 0.0 1FQ
HOH
 8.577
2.620
 CD
O
 FAF
O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:332 A:461 19.0 0.084 H -68.2 -40.3 19.0 0.084 0.0 HOH
 3.541
 CD
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 86.0 0.382 H -67.9 -43.2 86.0 0.382 0.0 DT
DT
DG
DG
DC
DCT
HOH
 9.485
7.172
3.249
3.523
5.619
4.376
2.755
 O
O
NH1
O
NH1
NH1
NH2
 O3'
OP1
N2
OP2
O2
O2
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 62.0 0.276 H -67.1 -40.0 62.0 0.276 0.0 DT
DT
DG
DC
DCT
HOH
 9.388
7.212
3.591
3.497
5.325
2.778
 O
O
CD
O
NH1
NE
 O3'
OP1
N3
OP2
O2
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 71.0 0.316 H -71.2 -37.8 71.0 0.316 0.0 DT
DT
DG
DG
DG
DC
DCT
HOH
 9.361
7.045
3.010
3.401
7.883
7.799
4.412
2.675
 O
O
NH1
CD
CD
NH1
NH1
NH1
 O3'
OP1
N2
C5'
P
O2
O2
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 73.0 0.324 H -67.6 -39.9 73.0 0.324 0.0 DT
DT
DG
DA
DC
DCT
HOH
 9.452
7.268
2.947
2.924
4.439
4.107
2.747
 O
O
NH1
O
NH1
NH1
NH2
 O3'
OP1
N2
OP2
N4
O2
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 72.0 0.32 H -69.2 -42.5 72.0 0.32 0.0 DT
DT
DG
DC
DC
DCT
 9.375
7.210
2.969
3.568
9.095
4.445
 O
O
NH1
CD
NH1
NH1
 O3'
OP1
N2
C5'
C2'
O2
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 69.0 0.307 H -67.2 -40.2 69.0 0.307 0.0 DT
DT
DG
DT
DCT
HOH
 9.414
7.303
3.117
3.183
4.360
2.743
 O
O
NH1
CD
NH1
NH2
 O3'
OP1
N2
O4'
O2
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:351 A:461 65.0 0.289 H -67.6 -41.3 65.0 0.289 0.0 DT
DT
DG
DG
DG
DA
DC
ZN
HOH
 9.476
7.301
3.775
3.696
9.307
7.805
5.918
8.818
4.349
 O
O
CD
O
CD
NE
NH1
NH1
NH1
 O3'
OP1
N3
OP1
P
C2
O2
ZN
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 ARG B:314 A:461 93.0 0.413 H -70.2 -53.6 93.0 0.413 0.0 BRU
BRU
 7.776
4.010
 NH2
NH2
 O2
O4
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 ARG A:314 A:461 84.0 0.373 H -64.6 -20.0 84.0 0.373 0.0 DAD
HOH
 5.210
8.724
 NH2
NH2
 C2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ARG A:460 A:460 16.0 0.071 H -65.7 -37.3