Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98095681 . C A CCDS7447.1:NM_004088.3:c.1393Cat>Aat_NP_004079.3:p.465H>N Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 HIS A:337 A:466 134.0 0.687 H -77.6 -24.8 134.0 0.687 0.0 HOH
 2.985
 CB
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 HIS A:337 A:466 127.0 0.651 H -74.5 -35.6 127.0 0.651 0.0 HOH
 3.016
 NE2
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 HIS A:337 A:466 141.0 0.723 H -73.6 -36.9 141.0 0.723 0.0 HOH
 3.275
 CB
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 132.0 0.677 H -77.5 -28.7 132.0 0.677 0.0 HOH
 3.430
 CB
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 135.0 0.692 H -74.3 -29.4 135.0 0.692 0.0 HOH
 3.257
 CD2
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 132.0 0.677 H -76.3 -32.1 132.0 0.677 0.0 HOH
 3.478
 ND1
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 141.0 0.723 H -72.7 -37.5 141.0 0.723 0.0 HOH
 3.391
 CB
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 141.0 0.723 H -74.6 -35.6 141.0 0.723 0.0 HOH
 3.276
 CB
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 122.0 0.626 H -75.3 -34.4 122.0 0.626 0.0 HOH
 3.851
 CE1
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 138.0 0.708 H -74.1 -36.7 138.0 0.708 0.0 HOH
 3.577
 CD2
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 124.0 0.636 H -73.7 -35.8 124.0 0.636 0.0 HOH
 2.864
 ND1
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 135.0 0.692 I -71.8 -41.2 135.0 0.692 0.0 HOH
 2.890
 O
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 126.0 0.646 H -75.4 -35.2 126.0 0.646 0.0 HOH
 4.911
 CE1
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 131.0 0.672 H -73.4 -37.0 131.0 0.672 0.0 HOH
 3.239
 CE1
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 136.0 0.697 H -73.5 -30.4 136.0 0.697 0.0 ZN
HOH
 2.056
3.159
 NE2
O
 ZN
O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 HIS A:356 A:466 140.0 0.718 H -72.8 -26.0 140.0 0.718 0.0 HOH
 2.872
 NE2
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 135.0 0.692 H -76.4 -34.6 135.0 0.692 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DG
HOH
 9.196
5.588
4.921
7.257
8.649
3.963
2.797
6.514
5.278
3.531
 CE1
ND1
O
ND1
CE1
CE1
NE2
CD2
NE2
O
 C2
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP2
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 130.0 0.667 H -81.0 -33.1 130.0 0.667 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DA
HOH
 9.059
6.022
5.263
7.160
8.290
3.680
2.817
6.348
5.350
2.875
 CE1
ND1
O
ND1
CE1
CE1
NE2
NE2
CD2
ND1
 C2
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP2
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 128.0 0.656 H -79.3 -30.8 128.0 0.656 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DC
HOH
 9.145
5.827
5.165
7.101
8.392
3.778
2.766
6.449
5.326
3.177
 CE1
ND1
O
ND1
CE1
CE1
NE2
NE2
CD2
NE2
 C2
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP1
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 130.0 0.667 H -79.1 -32.3 130.0 0.667 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DT
HOH
 9.127
6.011
5.370
7.284
8.433
3.752
2.830
6.330
5.301
3.148
 CE1
ND1
O
ND1
CE1
CE1
NE2
NE2
NE2
NE2
 N3
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP1
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:356 A:466 133.0 0.682 H -69.5 -27.3 133.0 0.682 0.0 DT
DT
DT
DG
DC
DA
DA
DA
DC
SO4
HOH
 8.403
3.940
3.406
6.525
6.614
8.958
5.606
4.810
7.087
9.030
3.109
 CE1
NE2
NE2
CD2
CD2
CE1
ND1
O
ND1
O
NE2
 O2
O3'
OP1
C5'
OP1
N3
O3'
OP1
OP1
O1
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:356 A:466 129.0 0.662 H -78.4 -22.1 129.0 0.662 0.0 DT
DT
DT
DG
DG
DA
DA
DA
HOH
 8.585
3.887
3.158
6.354
5.522
9.199
6.176
5.529
3.287
 CE1
CE1
NE2
NE2
NE2
CE1
ND1
O
NE2
 O2
O3'
OP1
C5'
OP2
N3
O3'
OP1
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 HIS A:356 A:466 131.0 0.672 H -65.7 -39.1 131.0 0.672 0.0 DA
DA
DC
DT
HOH
 6.554
4.081
3.823
9.600
7.434
 NE2
NE2
CE1
CD2
NE2
 O3'
O3'
C3'
C5'
O
HIS B:356 B:466 136.0 0.697 H -80.4 -36.9 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 HIS A:337 A:466 128.0 0.656 H -75.0 -36.1 128.0 0.656 0.0 HOH
 3.144
 CG
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 HIS A:337 A:466 127.0 0.651 H -72.0 -36.7 127.0 0.651 0.0 HOH
 3.141
 CB
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 133.0 0.682 H -83.3 -33.0 133.0 0.682 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DG
HOH
 9.220
6.003
5.124
7.114
8.550
3.839
2.813
6.551
5.564
3.071
 CE1
ND1
O
ND1
CE1
NE2
NE2
CD2
CD2
NE2
 N3
O3'
OP1
OP1
O3'
O3'
OP1
C5'
OP2
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 134.0 0.687 H -78.8 -31.1 134.0 0.687 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DC
HOH
 9.112
6.064
5.481
7.033
8.418
3.807
2.904
6.316
5.365
3.231
 CE1
ND1
O
ND1
CE1
NE2
NE2
NE2
CD2
O
 N3
O3'
OP1
OP1
O3'
O3'
OP1
C5'
OP2
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 130.0 0.667 H -78.4 -31.6 130.0 0.667 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DG
DG
HOH
 9.184
5.346
4.735
7.035
8.480
3.834
2.787
6.398
5.687
9.520
2.774
 CE1
ND1
O
ND1
CE1
NE2
NE2
CD2
NE2
NE2
ND1
 N3
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP1
OP1
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 128.0 0.656 H -78.5 -30.4 128.0 0.656 0.0 DA
DA
DA
DA
DC
DT
DT
DT
DG
DA
HOH
 9.786
9.052
6.249
5.392
7.496
8.190
3.817
3.000
6.384
5.692
2.928
 NE2
CE1
ND1
O
ND1
CE1
CE1
NE2
NE2
NE2
NE2
 C2
N3
O3'
OP1
OP1
O2
O3'
OP1
C5'
O5'
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 126.0 0.646 H -79.7 -31.1 126.0 0.646 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DC
 8.894
5.616
4.513
7.279
8.266
3.731
2.987
6.218
4.869
 CE1
ND1
O
ND1
CE1
CE1
NE2
NE2
NE2
 C2
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP2
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 136.0 0.697 H -80.1 -29.7 136.0 0.697 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DT
HOH
 9.324
6.387
5.475
7.163
8.449
3.793
2.945
6.465
5.462
5.199
 CE1
ND1
O
ND1
CE1
NE2
NE2
CD2
NE2
N
 N3
O3'
OP1
O5'
O2
O3'
OP1
C5'
OP2
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 HIS A:356 A:466 133.0 0.682 H -74.9 -33.1 133.0 0.682 0.0 DA
DA
DA
DC
DT
DT
DT
DG
DG
HOH
 8.906
5.038
4.658
7.317
8.626
3.943
3.173
6.369
6.303
3.338
 NE2
CD2
CD2
CD2
NE2
NE2
CE1
CE1
CE1
CE1
 N3
O3'
OP1
OP1
O2
O3'
OP1
C5'
OP1
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 HIS B:319 A:466 145.0 0.744 H -51.2 -13.1 145.0 0.744 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 HIS A:319 A:466 144.0 0.738 H -31.4 -32.2 144.0 0.738 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 HIS A:465 A:465 129.0 0.662 H -84.3 -41.8