Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr10 98095688 . G A CCDS7447.1:NM_004088.3:c.1400cGg>cAg_NP_004079.3:p.467R>Q Homo sapiens DNA nucleotidylexotransferase (DNTT), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1jms 1 P09838 81.27 0.0 X-RAY
 2002-01-23 ARG A:339 A:468 91.0 0.404 H -129.6 10.0 91.0 0.404 0.0 HOH
 2.905
 O
 O
4iqt 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:339 A:468 99.0 0.44 H -114.7 -5.7 99.0 0.44 0.0 HOH
 5.017
 NH2
 O
4iqu 1 P09838 81.27 0.0 X-RAY
 2013-09-04 ARG A:339 A:468 103.0 0.458 H -115.4 -5.9 103.0 0.458 0.0 HOH
 3.095
 NH1
 O
4i27 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 97.0 0.431 H -120.6 -5.9 97.0 0.431 0.0 HOH
 2.585
 O
 O
4i28 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 93.0 0.413 H -121.5 -6.5 93.0 0.413 0.0 HOH
 2.780
 O
 O
4i29 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 106.0 0.471 H -121.0 -0.2 106.0 0.471 0.0 HOH
 4.460
 NH2
 O
4i2a 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 103.0 0.458 H -116.1 -4.5 103.0 0.458 0.0 HOH
 3.073
 NH2
 O
4i2b 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 97.0 0.431 H -115.4 -7.6 97.0 0.431 0.0 HOH
 3.508
 NH2
 O
4i2c 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 115.0 0.511 H -116.7 -4.6 115.0 0.511 0.0 HOH
 2.793
 O
 O
4i2d 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 101.0 0.449 H -112.9 -4.4 101.0 0.449 0.0 HOH
 3.241
 CD
 O
4i2e 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 105.0 0.467 H -116.6 -4.4 105.0 0.467 0.0 HOH
 2.680
 O
 O
4i2f 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 108.0 0.48 I -117.8 -7.5 108.0 0.48 0.0 HOH
 2.611
 O
 O
4i2g 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 57.0 NA H -114.9 -4.8 57.0 NA NA HOH
 6.032
 C
 O
4i2h 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 105.0 0.467 H -118.2 -5.8 105.0 0.467 0.0 HOH
 5.293
 NH2
 O
4i2i 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 96.0 0.427 H -119.7 -5.1 96.0 0.427 0.0 HOH
 3.136
 CD
 O
4i2j 1 P09838 81.27 0.0 X-RAY
 2013-07-24 ARG A:358 A:468 63.0 NA H -117.8 8.2 63.0 NA NA HOH
 3.355
 CD
 O
4qz8 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 116.0 0.516 H -117.6 -6.0 116.0 0.516 0.0 DA
HOH
 9.093
2.818
 N
O
 OP1
O
4qz9 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 105.0 0.467 H -119.1 -2.4 105.0 0.467 0.0 DA
DA
HOH
 9.318
9.789
2.691
 N
N
O
 OP1
OP2
O
4qza 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 105.0 0.467 H -120.4 -4.9 105.0 0.467 0.0 DA
DC
HOH
 9.306
9.804
3.261
 N
N
CD
 OP1
OP1
O
4qzb 1 P09838 81.27 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 108.0 0.48 H -119.1 -4.7 108.0 0.48 0.0 DA
DT
HOH
 9.447
9.845
2.661
 N
N
O
 OP1
OP1
O
5d46 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:358 A:468 108.0 0.48 H -115.3 4.5 108.0 0.48 0.0 DA
SO4
HOH
 9.228
8.453
2.855
 N
C
NH2
 OP1
O3
O
5d49 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:358 A:468 104.0 0.462 H -119.9 -2.2 104.0 0.462 0.0 DG
DA
HOH
 9.833
9.745
2.695
 N
N
O
 OP2
OP1
O
5d4b 1 Q3UZ80 81.27 0.0 X-RAY
 2016-07-27 ARG A:358 A:468 104.0 0.462 H -132.9 -9.7 104.0 0.462 0.0 SO4
HOH
 8.590
6.230
 O
NH2
 O2
O
ARG B:358 B:468 99.0 0.44 T -136.0 -26.4 NA NA NA
4iqw 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:339 A:468 99.0 0.44 H -121.1 -5.8 99.0 0.44 0.0 HOH
 3.150
 CD
 O
4iqv 1 P09838 81.0 0.0 X-RAY
 2013-09-04 ARG A:339 A:468 111.0 0.493 H -114.9 -3.2 111.0 0.493 0.0 HOH
 5.854
 NH2
 O
4qzc 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 111.0 0.493 S -120.7 -5.0 111.0 0.493 0.0 DA
HOH
 9.282
4.488
 N
NH2
 OP1
O
4qzd 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 100.0 0.444 H -119.1 -4.8 100.0 0.444 0.0 DA
HOH
 9.556
5.316
 N
N
 OP1
O
4qze 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 109.0 0.484 H -119.7 -6.3 109.0 0.484 0.0 DA
HOH
 8.848
2.945
 N
NH1
 OP1
O
4qzf 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 114.0 0.507 H -117.2 -9.2 114.0 0.507 0.0 DA
DA
HOH
 9.524
9.774
2.714
 N
N
O
 OP1
OP2
O
4qzg 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 104.0 0.462 H -115.9 -5.2 104.0 0.462 0.0 DA
HOH
 8.649
5.832
 N
NH1
 OP1
O
4qzh 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 105.0 0.467 H -122.0 -4.3 105.0 0.467 0.0 DA
HOH
 9.551
2.777
 N
NH2
 OP1
O
4qzi 1 P09838 81.0 0.0 X-RAY
 2015-06-10 ARG A:358 A:468 113.0 0.502 H -119.3 -5.5 113.0 0.502 0.0 DA
HOH
 9.010
3.914
 N
NH1
 OP1
O
1kdh 2 12802443 82.92 0.0 X-RAY
 2002-05-13 ARG B:321 A:468 96.0 0.427 H -130.9 3.0 96.0 0.427 0.0
1kej 1 P09838 82.92 0.0 X-RAY
 2002-05-16 ARG A:321 A:468 113.0 0.502 H -116.8 5.3 113.0 0.502 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04053-f1 1 P04053 100.0 0.0 ARG A:467 A:467 91.0 0.404 S -111.3 -7.4